Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 4.7e-183 644.4 330 100.0
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 3.4e-165 585.1 332 87.7
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 1.3e-164 583.2 335 88.7
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.4e-163 579.7 332 87.3
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.4e-163 579.7 332 87.3
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 2.7e-162 575.5 334 89.8
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 2.7e-162 575.5 331 83.7
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 7.2e-160 567.4 332 84.9
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.2e-159 566.6 332 85.8
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 3.6e-159 565.1 332 84.6
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 4.4e-157 558.1 331 83.4
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 2.7e-154 548.9 277 96.0
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.3e-153 546.6 331 85.8
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 1.1e-152 543.5 275 94.5
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 2.1e-151 539.3 278 95.0
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 2.3e-150 535.8 277 92.8
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 2.3e-150 535.8 277 92.8
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 6.8e-150 534.3 277 92.4
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 6.0e-138 494.6 277 86.3
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 9.9e-125 450.7 280 76.4
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.3e-124 450.3 297 73.1
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 2.9e-124 449.1 297 72.7
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 4.2e-123 445.3 280 76.8
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 9.2e-123 444.1 283 75.3
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.3e-121 439.5 282 76.2
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 3.3e-120 435.6 279 73.5
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 3.6e-119 432.2 280 75.0
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 4.8e-119 431.8 284 73.2
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.1e-118 430.6 279 74.2
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 1.8e-118 429.9 281 73.3
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 2.0e-117 426.4 275 72.7
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 4.4e-117 425.2 261 84.7
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.9e-116 422.5 279 72.4
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 4.9e-116 421.8 283 72.4
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 6.4e-116 421.4 337 63.5
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 3.2e-115 419.1 286 71.0
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 7.1e-115 417.9 279 71.7
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 3.5e-114 415.6 279 71.7
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 1.0e-113 414.1 280 70.7
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 3.0e-113 412.5 281 72.2
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 8.7e-113 411.0 288 67.4
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.9e-112 409.8 281 71.5
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.9e-112 409.8 280 68.6
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.9e-112 409.8 296 65.9
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 5.6e-112 408.3 279 69.9
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 4.8e-111 405.2 279 66.7
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 4.8e-111 405.2 280 69.3
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 4.8e-111 405.2 279 69.2
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 4.8e-111 405.2 279 69.2
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 8.1e-111 404.4 282 68.1
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 8.1e-111 404.4 285 66.7
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.1e-110 404.1 282 68.4
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 1.8e-110 403.3 282 68.4
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 1.8e-110 403.3 280 68.6
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 3.4e-109 399.1 267 68.5
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 3.4e-109 399.1 283 69.3
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 3.4e-109 399.1 283 69.3
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 7.6e-109 397.9 280 69.3
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 2.9e-108 396.0 280 66.1
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 2.9e-108 396.0 279 67.4
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 3.8e-108 395.6 277 67.1
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 3.8e-108 395.6 279 69.5
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 4.9e-108 395.2 279 67.0
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 6.4e-108 394.8 279 66.7
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 1.9e-107 393.3 279 65.2
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 2.4e-107 392.9 278 66.5
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 3.2e-107 392.5 281 66.2
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 9.3e-107 391.0 289 64.7
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 1.2e-106 390.6 278 66.9
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 2.1e-106 389.8 279 67.0
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.0e-105 387.5 282 66.3
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 6.7e-105 384.8 277 65.7
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.3e-103 380.6 285 65.6
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 2.1e-103 379.8 237 76.4
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 2.8e-103 379.4 277 65.7
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 8.1e-103 377.9 285 65.3
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 8.1e-103 377.9 315 58.7
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 2.0e-101 373.2 237 75.9
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.6e-101 372.9 284 62.3
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.6e-101 372.9 284 62.3
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.3e-100 370.5 304 59.2
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.1e-99 367.5 391 49.4
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 4.2e-99 365.5 261 66.7
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 5.5e-99 365.2 353 52.7
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 2.1e-98 363.2 236 73.7
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 4.6e-98 362.1 398 48.5
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 1.0e-97 360.9 279 64.2
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 2.5e-96 356.3 273 63.7
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 5.3e-94 348.6 309 56.6
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 2.6e-93 346.3 282 59.6
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 1.3e-92 344.0 301 59.5
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 8.4e-92 341.3 322 55.0
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 2.1e-90 336.7 280 61.4
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 2.1e-90 336.7 281 61.6
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 2.1e-90 336.7 281 61.6
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 3.9e-89 332.4 269 61.0
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 7.4e-88 328.2 256 59.4
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.2e-87 326.6 297 55.2
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.4e-86 323.9 279 58.8
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 2.9e-76 289.7 270 55.6
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 3.2e-75 286.2 273 53.1
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 3.6e-74 282.7 188 70.7
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 7.9e-74 281.6 192 67.7
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 7.9e-74 281.6 186 71.5
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.1e-72 277.7 304 47.4
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 9.7e-72 274.6 268 51.1
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 6.3e-71 271.9 187 68.4
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.8e-70 270.4 324 47.2
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 5.3e-62 242.3 252 47.6
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 7.2e-59 231.9 255 45.5
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.6e-58 230.7 142 75.4
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 7.5e-56 221.9 191 60.2
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 4.8e-55 219.2 209 54.1
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 2.4e-54 216.9 254 44.1
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.5e-40 171.0 91 87.9
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 3.2e-38 163.3 113 67.3
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 3.2e-38 163.3 113 67.3
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.8e-34 150.2 86 81.4
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 1.1e-30 138.3 95 69.5
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 2.7e-29 133.7 95 69.5
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 1.7e-28 131.0 65 93.8
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 1.7e-28 131.0 92 66.3
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.9e-28 129.8 90 65.6
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 9.5e-27 125.2 96 61.5
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 9.5e-27 125.2 93 59.1
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 6.2e-26 122.5 82 70.7
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.7e-23 114.4 75 73.3
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 2.4e-22 110.5 93 59.1
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 9.2e-22 108.6 112 49.1
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 3.9e-20 103.2 106 49.1
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 1.5e-19 101.3 61 72.1
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 4.3e-19 99.8 62 72.6
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 6.2e-18 95.9 51 82.4
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 8.1e-18 95.5 49 79.6
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.5e-11 73.9 57 59.6
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 7.3e-11 72.4 38 78.9
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.1e-10 70.9 46 67.4
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 3.6e-10 70.1 35 77.1
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.1e-09 68.6 65 53.8
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 6.8e-09 65.9 33 78.8
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 6.8e-09 65.9 33 78.8
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 3.4e-08 63.5 54 50.0


User provided reference genes

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