Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 5.6e-190 667.5 360 100.0
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 4.2e-121 438.7 358 73.2
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 1.7e-114 416.8 358 69.3
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-113 413.7 359 70.8
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.6e-112 410.2 368 69.0
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 2.8e-112 409.5 358 69.8
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 8.0e-112 407.9 358 69.8
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 8.0e-112 407.9 354 69.2
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 8.0e-112 407.9 358 69.8
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.5e-110 403.7 359 70.5
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 7.5e-110 401.4 360 69.7
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 2.0e-102 376.7 365 64.4
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 7.8e-99 364.8 361 63.2
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 2.3e-98 363.2 361 62.9
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 8.6e-98 361.3 361 62.9
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 4.3e-97 359.0 357 62.5
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 6.2e-96 355.1 364 64.3
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.7e-93 347.1 366 61.2
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 3.4e-86 322.8 290 66.6
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 3.4e-86 322.8 352 58.0
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 6.4e-85 318.5 361 62.6
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.4e-84 317.4 369 61.2
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 2.8e-80 303.1 278 65.8
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 1.5e-73 280.8 363 56.2
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 4.6e-51 206.1 400 46.2
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 8.7e-50 201.8 409 42.5
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.5e-49 201.1 400 45.8
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 1.9e-49 200.7 384 46.9
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 3.3e-49 199.9 410 42.4
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-47 194.9 401 45.1
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 1.4e-47 194.5 420 42.4
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 3.1e-47 193.4 434 42.4
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 6.9e-47 192.2 381 45.9
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 6.9e-47 192.2 381 45.9
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.2e-46 191.4 424 42.5
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.2e-46 191.4 424 42.5
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 5.9e-46 189.1 445 40.9
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 7.6e-46 188.7 398 42.5
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 2.2e-45 187.2 442 40.0
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 5.0e-45 186.0 379 44.9
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 5.0e-45 186.0 379 44.9
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 1.9e-44 184.1 431 42.2
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 4.2e-44 183.0 422 41.0
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.2e-43 181.4 422 40.8
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.6e-43 181.0 417 41.5
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 1.6e-43 181.0 388 43.0
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 1.3e-42 177.9 394 43.7
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 5.1e-42 176.0 412 40.8
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 8.7e-42 175.3 426 41.3
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 9.7e-41 171.8 438 39.7
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.4e-39 167.2 434 38.2
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 3.1e-23 113.6 179 46.4
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 3.1e-23 113.6 189 44.4
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 2.0e-22 110.9 398 33.4
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 2.0e-22 110.9 185 41.1
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 2.0e-22 110.9 178 43.8
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.5e-20 104.8 419 30.5
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 2.5e-20 104.0 169 42.6
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 9.4e-20 102.1 460 29.3
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 1.6e-19 101.3 167 46.1
BolC7t43237H Brassica oleracea HOM05D004305 ORTHO05D005159 1.8e-18 97.8 68 79.4
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 3.0e-18 97.1 184 39.7
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 6.7e-18 95.9 386 32.1
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.5e-17 94.7 194 39.2
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 3.3e-17 93.6 423 29.3
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 3.3e-17 93.6 185 39.5
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 9.7e-17 92.0 369 31.2
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 9.7e-17 92.0 428 28.7
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 1.3e-16 91.7 211 37.0
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.3e-16 91.7 388 28.9
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.7e-16 91.3 399 31.1
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 1.7e-16 91.3 428 28.7
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 2.8e-16 90.5 358 30.7
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.8e-16 90.5 171 41.5
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 4.8e-16 89.7 174 42.0
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 6.3e-16 89.4 355 30.4
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 8.2e-16 89.0 171 40.9
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 8.2e-16 89.0 380 31.1
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 8.2e-16 89.0 385 27.8
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 1.1e-15 88.6 461 29.1
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 1.1e-15 88.6 167 41.9
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.4e-15 88.2 189 39.7
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.8e-15 87.8 374 31.0
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.8e-15 87.8 325 31.4
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 3.1e-15 87.0 355 29.6
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 3.1e-15 87.0 184 38.6
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 4.1e-15 86.7 166 40.4
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 5.3e-15 86.3 282 31.9
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 7.0e-15 85.9 387 29.5
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 7.0e-15 85.9 333 30.6
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 2.7e-14 84.0 210 35.7
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 3.5e-14 83.6 187 36.4
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.5e-14 83.6 56 75.0
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.5e-14 83.2 182 38.5
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 4.5e-14 83.2 203 37.4
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 5.9e-14 82.8 434 28.3
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 5.9e-14 82.8 187 36.4
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 7.7e-14 82.4 198 36.4
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 1.3e-13 81.6 190 36.8
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.7e-13 81.3 369 28.5
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 2.9e-13 80.5 83 48.2
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 2.9e-13 80.5 322 32.6
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 3.8e-13 80.1 90 52.2
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 3.8e-13 80.1 193 37.3
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 5.0e-13 79.7 405 28.1
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 6.5e-13 79.3 404 27.5
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 6.5e-13 79.3 434 27.4
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 6.5e-13 79.3 370 30.3
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 8.5e-13 79.0 366 27.9
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 1.1e-12 78.6 398 27.9
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.5e-12 78.2 196 33.2
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.9e-12 77.8 190 35.8
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 1.9e-12 77.8 313 30.4
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.5e-12 77.4 66 54.5
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 2.5e-12 77.4 407 28.3
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 3.2e-12 77.0 437 28.1
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 4.2e-12 76.6 317 28.1
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 5.5e-12 76.3 386 29.3
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 7.2e-12 75.9 187 32.6
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 1.2e-11 75.1 62 59.7
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 1.6e-11 74.7 60 65.0
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.1e-11 74.3 419 26.0
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.1e-11 74.3 385 28.8
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.7e-11 73.9 466 24.0
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.7e-11 73.9 161 37.9
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 2.7e-11 73.9 61 63.9
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 3.6e-11 73.6 374 27.5
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 8.0e-11 72.4 406 28.8
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 8.0e-11 72.4 400 30.0
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.4e-10 71.6 421 28.3
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 1.8e-10 71.2 406 27.3
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.3e-10 70.9 336 27.1
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 3.0e-10 70.5 422 24.2
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 4.0e-10 70.1 399 26.1
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 5.2e-10 69.7 322 26.7
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 6.8e-10 69.3 73 54.8
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 8.8e-10 68.9 162 35.8
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 1.5e-09 68.2 385 27.3
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 1.5e-09 68.2 333 26.4
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.0e-09 67.8 417 27.8
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 2.0e-09 67.8 186 30.6
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 4.4e-09 66.6 362 28.2
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 5.7e-09 66.2 344 29.9
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 7.5e-09 65.9 403 25.1
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 7.5e-09 65.9 348 28.4
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 9.8e-09 65.5 340 29.1
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.3e-08 65.1 60 56.7
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 1.3e-08 65.1 377 26.5
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 2.8e-08 63.9 57 64.9
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 4.8e-08 63.2 179 31.3
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 1.1e-07 62.0 313 28.1
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 2.4e-07 60.8 360 25.0
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 7.0e-07 59.3 336 27.4
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 9.1e-07 58.9 52 59.6
HPP92_013922 Vanilla planifolia HOM05D004305 ORTHO05D005159 9.1e-07 58.9 368 27.4
C07p27070 Brassica napus HOM05D004305 ORTHO05D005159 2.7e-06 57.4 48 60.4
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 5.9e-06 56.2 65 49.2
Zm00001eb217990 Zea mays HOM05D023203 ORTHO05D025996 5.9e-06 56.2 55 56.4


User provided reference genes

Program Settings