Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 6.0e-61 237.3 115 100.0
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 5.2e-57 224.2 115 94.8
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 1.5e-56 222.6 115 90.4
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 4.4e-56 221.1 115 90.4
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 4.4e-56 221.1 115 90.4
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 1.3e-55 219.5 115 89.6
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 4.9e-55 217.6 115 89.6
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 5.4e-54 214.2 115 87.8
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 1.3e-52 209.5 115 87.8
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 6.2e-50 200.7 103 90.3
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.7e-47 192.6 115 78.3
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 1.1e-46 189.9 99 88.9
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.1e-43 179.9 120 77.5
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 7.1e-30 134.0 83 78.3
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 7.9e-29 130.6 120 58.3
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 3.0e-28 128.6 109 57.8
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 3.9e-28 128.3 114 58.8
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 5.1e-28 127.9 110 54.5
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 5.1e-28 127.9 110 54.5
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 5.1e-28 127.9 110 54.5
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 5.1e-28 127.9 112 57.1
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 5.1e-28 127.9 110 54.5
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 5.1e-28 127.9 112 57.1
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 5.1e-28 127.9 112 57.1
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 5.1e-28 127.9 110 54.5
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 5.1e-28 127.9 110 55.5
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 5.1e-28 127.9 120 57.5
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 1.1e-27 126.7 110 55.5
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 1.1e-27 126.7 110 54.5
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 1.5e-27 126.3 112 56.2
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 1.9e-27 125.9 112 56.2
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 1.9e-27 125.9 112 56.2
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 2.5e-27 125.6 122 59.0
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 3.3e-27 125.2 119 57.1
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 3.3e-27 125.2 119 57.1
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 3.3e-27 125.2 127 52.0
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 4.3e-27 124.8 108 54.6
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 5.7e-27 124.4 111 55.9
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 5.7e-27 124.4 111 55.9
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 2.1e-26 122.5 116 55.2
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 2.8e-26 122.1 120 51.7
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 3.7e-26 121.7 119 55.5
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 4.8e-26 121.3 108 54.6
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 4.8e-26 121.3 125 52.0
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 4.8e-26 121.3 128 51.6
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 4.8e-26 121.3 114 57.9
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 6.3e-26 120.9 124 53.2
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 8.2e-26 120.6 122 53.3
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 1.1e-25 120.2 126 51.6
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 1.1e-25 120.2 120 51.7
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 1.8e-25 119.4 120 47.5
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.1e-25 118.6 106 57.5
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 4.1e-25 118.2 124 49.2
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 5.3e-25 117.9 126 52.4
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 5.3e-25 117.9 121 49.6
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 5.3e-25 117.9 121 49.6
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 6.9e-25 117.5 114 54.4
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 6.9e-25 117.5 127 48.8
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 6.9e-25 117.5 130 50.0
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 1.2e-24 116.7 114 54.4
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 1.2e-24 116.7 118 55.1
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 2.0e-24 115.9 117 53.8
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 2.6e-24 115.5 112 53.6
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 3.4e-24 115.2 120 54.2
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 5.9e-24 114.4 120 49.2
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 5.9e-24 114.4 131 47.3
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 7.6e-24 114.0 110 50.0
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 7.6e-24 114.0 120 50.8
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 1.0e-23 113.6 123 51.2
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 1.0e-23 113.6 122 52.5
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 1.3e-23 113.2 125 48.8
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 1.7e-23 112.8 120 50.0
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 2.9e-23 112.1 123 55.3
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 2.9e-23 112.1 119 51.3
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 2.9e-23 112.1 126 47.6
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 2.9e-23 112.1 122 52.5
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 2.9e-23 112.1 122 53.3
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 3.8e-23 111.7 98 55.1
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 3.8e-23 111.7 118 51.7
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 5.0e-23 111.3 125 49.6
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 5.0e-23 111.3 121 50.4
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 5.0e-23 111.3 123 52.8
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 6.5e-23 110.9 123 50.4
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 1.1e-22 110.2 124 49.2
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 1.1e-22 110.2 130 47.7
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.1e-22 110.2 116 53.4
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.1e-22 110.2 116 53.4
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 1.1e-22 110.2 116 53.4
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 1.1e-22 110.2 122 52.5
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 1.4e-22 109.8 122 49.2
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 1.4e-22 109.8 123 51.2
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 1.9e-22 109.4 124 52.4
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 2.5e-22 109.0 121 47.9
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 3.2e-22 108.6 121 47.9
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 3.2e-22 108.6 124 48.4
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 3.2e-22 108.6 125 50.4
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 4.2e-22 108.2 117 52.1
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 4.2e-22 108.2 116 48.3
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 5.5e-22 107.8 134 44.8
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 7.2e-22 107.5 129 46.5
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 7.2e-22 107.5 122 49.2
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 9.3e-22 107.1 124 47.6
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 9.3e-22 107.1 122 47.5
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 9.3e-22 107.1 119 52.1
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 9.3e-22 107.1 119 52.1
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 9.3e-22 107.1 113 51.3
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 9.3e-22 107.1 126 49.2
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.2e-21 106.7 122 48.4
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 1.2e-21 106.7 122 50.8
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 1.2e-21 106.7 120 46.7
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 2.1e-21 105.9 117 46.2
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 2.7e-21 105.5 112 48.2
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 3.5e-21 105.1 108 50.9
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 3.5e-21 105.1 111 50.5
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 3.5e-21 105.1 126 46.8
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 3.5e-21 105.1 110 52.7
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 3.5e-21 105.1 122 50.8
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.5e-21 105.1 122 50.8
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 3.5e-21 105.1 104 54.8
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 4.6e-21 104.8 128 46.9
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 6.1e-21 104.4 123 47.2
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 6.1e-21 104.4 121 49.6
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 7.9e-21 104.0 123 50.4
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.0e-20 103.6 122 50.0
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 1.3e-20 103.2 124 50.8
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 1.3e-20 103.2 120 50.0
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.3e-20 103.2 124 47.6
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.8e-20 102.8 121 47.9
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.8e-20 102.8 124 47.6
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 2.3e-20 102.4 125 46.4
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 3.0e-20 102.1 127 45.7
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 3.9e-20 101.7 101 56.4
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 5.1e-20 101.3 121 48.8
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 6.7e-20 100.9 121 45.5
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 6.7e-20 100.9 121 47.1
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 8.7e-20 100.5 114 46.5
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 1.1e-19 100.1 121 44.6
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 1.1e-19 100.1 112 50.0
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 1.9e-19 99.4 70 65.7
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.9e-19 99.4 111 52.3
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 1.9e-19 99.4 129 43.4
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 2.5e-19 99.0 110 48.2
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 2.5e-19 99.0 110 48.2
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 2.5e-19 99.0 122 43.4
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 2.5e-19 99.0 122 43.4
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 2.5e-19 99.0 122 43.4
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 3.3e-19 98.6 124 43.5
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 5.7e-19 97.8 126 43.7
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 7.4e-19 97.4 139 43.2
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 9.7e-19 97.1 123 43.9
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 2.8e-18 95.5 106 49.1
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 2.8e-18 95.5 128 45.3
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 3.7e-18 95.1 117 42.7
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 4.8e-18 94.7 118 43.2
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 4.8e-18 94.7 111 48.6
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 4.8e-18 94.7 112 48.2
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 4.8e-18 94.7 106 51.9
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 4.8e-18 94.7 109 48.6
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 6.3e-18 94.4 132 44.7
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 6.3e-18 94.4 117 45.3
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 8.2e-18 94.0 119 42.0
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 1.1e-17 93.6 110 43.6
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 1.8e-17 92.8 127 43.3
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 2.4e-17 92.4 118 48.3
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 5.3e-17 91.3 112 47.3
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 5.3e-17 91.3 111 50.5
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 3.4e-16 88.6 114 49.1
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 3.4e-16 88.6 105 45.7
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 3.8e-15 85.1 117 41.0
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 5.5e-14 81.3 100 48.0
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.6e-13 79.7 150 34.0
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 1.0e-12 77.0 96 49.0
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 1.4e-12 76.6 119 40.3
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 3.0e-12 75.5 159 34.6
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 5.1e-12 74.7 145 34.5
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 2.0e-11 72.8 112 36.6
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 1.7e-10 69.7 152 35.5
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 2.2e-10 69.3 76 53.9
Pp3c24_1050 Physcomitrium patens HOM05D003630 ORTHO05D004151 3.4e-08 62.0 156 32.1
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 2.5e-06 55.8 121 35.5
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 2.5e-06 55.8 124 36.3
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 3.2e-06 55.5 126 34.9


User provided reference genes

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