Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g09080 Schrenkiella parvula HOM05D007676 ORTHO05D009456 1.2e-67 259.6 124 100.0
BcaC03g16646 Brassica carinata HOM05D007676 ORTHO05D009456 2.1e-64 248.8 124 94.4
A02p28290 Brassica napus HOM05D007676 ORTHO05D009456 2.1e-64 248.8 124 94.4
C02p44830 Brassica napus HOM05D007676 ORTHO05D009456 2.1e-64 248.8 124 94.4
BolC2t10523H Brassica oleracea HOM05D007676 ORTHO05D009456 2.1e-64 248.8 124 94.4
BraA02t07864Z Brassica rapa HOM05D007676 ORTHO05D009456 2.1e-64 248.8 124 94.4
CARHR178940 Cardamine hirsuta HOM05D007676 ORTHO05D009456 2.1e-59 232.3 125 88.0
Carub.0008s0425 Capsella rubella HOM05D007676 ORTHO05D009456 3.5e-59 231.5 124 87.1
AL8G15740 Arabidopsis lyrata HOM05D007676 ORTHO05D009456 4.6e-59 231.1 125 88.0
AT5G44265 Arabidopsis thaliana HOM05D007676 ORTHO05D009456 3.9e-58 228.0 125 86.4
Thhalv10003292m.g Eutrema salsugineum HOM05D007676 ORTHO05D009456 1.3e-56 223.0 119 91.6
Aa31LG5G2990 Aethionema arabicum HOM05D007676 ORTHO05D009456 2.5e-49 198.7 125 73.6
THA.LOC104801166 Tarenaya hassleriana HOM05D007676 ORTHO05D009456 2.3e-34 149.1 123 55.3
Ciclev10017923m.g Citrus clementina HOM05D007676 ORTHO05D009456 1.3e-29 133.3 117 53.0
Atru.chr6.2889 Acer truncatum HOM05D007676 ORTHO05D009456 2.7e-27 125.6 121 47.1
Atru.chr6.2952 Acer truncatum HOM05D007676 ORTHO05D009456 2.7e-27 125.6 121 47.1
TWI23G0504 Tripterygium wilfordii HOM05D007676 ORTHO05D009456 2.8e-24 115.5 115 49.6
Glyma.12G204200 Glycine max HOM05D007676 ORTHO05D009456 1.4e-23 113.2 119 46.2
PGR042G0101 Punica granatum HOM05D007676 ORTHO05D009456 4.1e-23 111.7 90 56.7
Potri.017G013200 Populus trichocarpa HOM05D007676 ORTHO05D009456 1.3e-21 106.7 90 55.6
Phvul.005G103800 Phaseolus vulgaris HOM05D007676 ORTHO05D009456 1.7e-21 106.3 119 47.9
Lalb_Chr14g0366911 Lupinus albus HOM05D007676 ORTHO05D009456 2.2e-21 105.9 121 47.1
VMungo1080G1717 Vigna mungo HOM05D007676 ORTHO05D009456 1.9e-20 102.8 96 51.0
Eucgr.A01836 Eucalyptus grandis HOM05D007676 ORTHO05D009456 2.7e-19 99.0 114 43.9
Lalb_Chr00c25g0407471 Lupinus albus HOM05D007676 ORTHO05D009456 3.6e-19 98.6 122 43.4
Lalb_Chr14g0366961 Lupinus albus HOM05D007676 ORTHO05D009456 3.6e-19 98.6 121 43.8
Lj3g0021089 Lotus japonicus HOM05D007676 ORTHO05D009456 6.1e-19 97.8 119 42.9
Prupe.2G079300 Prunus persica HOM05D007676 ORTHO05D009456 3.0e-18 95.5 90 48.9
Prupe.3G134200 Prunus persica HOM05D007676 ORTHO05D009456 3.0e-18 95.5 91 48.4
RcHm_v2.0_Chr2g0127571 Rosa chinensis HOM05D007676 ORTHO05D009456 3.0e-18 95.5 90 45.6
QL04p080567 Quercus lobata HOM05D007676 ORTHO05D009456 5.2e-18 94.7 118 43.2
TPR.G6389 Trifolium pratense HOM05D007676 ORTHO05D009456 1.5e-17 93.2 95 46.3
Potri.007G138400 Populus trichocarpa HOM05D007676 ORTHO05D009456 2.6e-17 92.4 109 40.4
Lalb_Chr00c08g0404761 Lupinus albus HOM05D007676 ORTHO05D009456 5.7e-17 91.3 122 41.8
MD17G1235700 Malus domestica HOM05D007676 ORTHO05D009456 1.4e-15 86.7 90 43.3
Sabra07G0111500 Salix brachista HOM05D007676 ORTHO05D009456 7.0e-15 84.3 89 41.6
Potri.007G138500 Populus trichocarpa HOM05D007676 ORTHO05D009456 1.6e-14 83.2 114 40.4
RcHm_v2.0_Chr2g0127591 Rosa chinensis HOM05D007676 ORTHO05D009456 4.5e-14 81.6 118 38.1
MD06G1108000 Malus domestica HOM05D007676 ORTHO05D009456 2.2e-13 79.3 88 40.9
MD06G1108100 Malus domestica HOM05D007676 ORTHO05D009456 2.2e-13 79.3 112 34.8
Medtr2g090350 Medicago truncatula HOM05D007676 ORTHO05D009456 2.9e-13 79.0 121 37.2
Migut.M00162 Erythranthe guttata HOM05D007676 ORTHO05D009456 5.0e-13 78.2 92 43.5
Manes.12G089100 Manihot esculenta HOM05D007676 ORTHO05D009456 6.5e-13 77.8 115 33.9
FAN12G2565 Fragaria x ananassa HOM05D007676 ORTHO05D009456 1.9e-12 76.3 117 37.6
FvH4_4g18380 Fragaria vesca HOM05D007676 ORTHO05D009456 2.5e-12 75.9 117 37.6
Thecc.02G183500 Theobroma cacao HOM05D007676 ORTHO05D009456 2.5e-12 75.9 89 41.6
FAN23G2239 Fragaria x ananassa HOM05D007676 ORTHO05D009456 3.2e-12 75.5 78 41.0
THA.LOC104804054 Tarenaya hassleriana HOM05D007676 ORTHO05D009456 3.2e-12 75.5 94 37.2
Lalb_Chr00c08g0404751 Lupinus albus HOM05D007676 ORTHO05D009456 7.2e-12 74.3 111 38.7
Lalb_Chr00c13g0404911 Lupinus albus HOM05D007676 ORTHO05D009456 7.2e-12 74.3 111 38.7
Ciclev10018195m.g Citrus clementina HOM05D007676 ORTHO05D009456 9.4e-12 73.9 123 34.1
Eucgr.A01837 Eucalyptus grandis HOM05D007676 ORTHO05D009456 9.4e-12 73.9 90 37.8
Sabra07G0111600 Salix brachista HOM05D007676 ORTHO05D009456 1.2e-11 73.6 89 41.6
CAN.G209.28 Capsicum annuum HOM05D007676 ORTHO05D009456 3.6e-11 72.0 117 34.2
Sabra02G0009600 Salix brachista HOM05D007676 ORTHO05D009456 3.6e-11 72.0 114 36.0
FAN05G5516 Fragaria x ananassa HOM05D007676 ORTHO05D009456 4.7e-11 71.6 90 38.9
Potri.002G012300 Populus trichocarpa HOM05D007676 ORTHO05D009456 4.7e-11 71.6 113 36.3
Solyc10g008205.2 Solanum lycopersicum HOM05D007676 ORTHO05D009456 4.7e-11 71.6 92 37.0
Aa31LG2G22250 Aethionema arabicum HOM05D007676 ORTHO05D009456 1.0e-10 70.5 93 40.9
Peaxi162Scf00008g00063 Petunia axillaris HOM05D007676 ORTHO05D009456 1.8e-10 69.7 90 40.0
Thhalv10026526m.g Eutrema salsugineum HOM05D007676 ORTHO05D009456 2.3e-10 69.3 129 34.9
SalBow7G3232 Salvia bowleyana HOM05D007676 ORTHO05D009456 2.3e-10 69.3 89 39.3
SalBow7G3503 Salvia bowleyana HOM05D007676 ORTHO05D009456 2.3e-10 69.3 89 39.3
Peaxi162Scf00050g00313 Petunia axillaris HOM05D007676 ORTHO05D009456 5.2e-10 68.2 117 33.3
BolC7t46093H Brassica oleracea HOM05D007676 ORTHO05D009456 8.8e-10 67.4 124 32.3
Aa31LG7G7240 Aethionema arabicum HOM05D007676 ORTHO05D009456 1.2e-09 67.0 127 33.9
Manes.13G144000 Manihot esculenta HOM05D007676 ORTHO05D009456 1.2e-09 67.0 91 37.4
FvH4_6g26560 Fragaria vesca HOM05D007676 ORTHO05D009456 1.5e-09 66.6 90 36.7
CARHR236140 Cardamine hirsuta HOM05D007676 ORTHO05D009456 2.0e-09 66.2 125 33.6
MD14G1128300 Malus domestica HOM05D007676 ORTHO05D009456 2.0e-09 66.2 83 42.2
A03p58040 Brassica napus HOM05D000223 ORTHO05D000736 3.4e-09 65.5 132 31.8
BraA03t14868Z Brassica rapa HOM05D007676 ORTHO05D009456 3.4e-09 65.5 132 31.8
Sp7g26360 Schrenkiella parvula HOM05D007676 ORTHO05D009456 3.4e-09 65.5 98 33.7
Aa31LG7G7230 Aethionema arabicum HOM05D007676 ORTHO05D009456 5.7e-09 64.7 99 36.4
C07p56160 Brassica napus HOM05D000223 ORTHO05D000736 9.8e-09 63.9 124 31.5
arahy.Tifrunner.gnm1.ann1.0QPA7A Arachis hypogaea HOM05D029628 ORTHO05D009456 4.9e-08 61.6 114 34.2
arahy.Tifrunner.gnm1.ann1.W0QD2B Arachis hypogaea HOM05D029628 ORTHO05D009456 4.9e-08 61.6 114 34.2
AT4G28395 Arabidopsis thaliana HOM05D007676 ORTHO05D009456 8.3e-08 60.8 98 34.7
Carub.0007s1233 Capsella rubella HOM05D007676 ORTHO05D009456 8.3e-08 60.8 129 31.0
CARHR236150 Cardamine hirsuta HOM05D007676 ORTHO05D009456 8.3e-08 60.8 136 32.4
AL7G24190 Arabidopsis lyrata HOM05D007676 ORTHO05D009456 2.4e-07 59.3 98 34.7
arahy.Tifrunner.gnm1.ann1.SH5L4P Arachis hypogaea HOM05D029628 ORTHO05D009456 2.4e-07 59.3 114 33.3
FvH4_4g18390 Fragaria vesca HOM05D007676 ORTHO05D009456 2.4e-07 59.3 116 34.5
FAN12G3844 Fragaria x ananassa HOM05D007676 ORTHO05D009456 2.4e-07 59.3 116 34.5
FAN12G3363 Fragaria x ananassa HOM05D007676 ORTHO05D009456 3.1e-07 58.9 116 34.5
Peaxi162Scf00059g00109 Petunia axillaris HOM05D007676 ORTHO05D009456 3.1e-07 58.9 91 29.7
TWI38G2037 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 4.1e-07 58.5 80 37.5
FAN07G1701 Fragaria x ananassa HOM05D007676 ORTHO05D009456 5.4e-07 58.2 116 33.6
TWI38G1893 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 5.4e-07 58.2 80 38.8
Lalb_Chr14g0367061 Lupinus albus HOM05D007676 ORTHO05D009456 7.0e-07 57.8 89 34.8
TWI38G1593 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 7.0e-07 57.8 80 38.8
Carub.0007s1234 Capsella rubella HOM05D007676 ORTHO05D009456 1.2e-06 57.0 134 34.3
PGSC0003DMG400032819 Solanum tuberosum HOM05D007676 ORTHO05D009456 3.5e-06 55.5 114 32.5
MBI02_g15133_MAGBIO Magnolia biondii HOM05D000275 ORTHO05D000181 7.7e-06 54.3 81 34.6


User provided reference genes

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