Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 3.3e-122 441.8 234 100.0
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 1.3e-107 393.3 235 91.1
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 1.5e-106 389.8 235 89.8
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 1.5e-106 389.8 235 89.8
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 2.1e-105 386.0 236 89.8
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 5.2e-104 381.3 227 91.2
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 3.7e-102 375.2 236 88.1
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 2.3e-99 365.9 224 88.8
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 6.6e-99 364.4 235 85.1
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 8.6e-99 364.0 235 83.4
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 1.2e-95 353.6 236 82.2
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 1.2e-95 353.6 235 82.1
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 3.5e-68 262.3 223 66.8
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 3.8e-54 215.7 155 79.4
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 6.3e-49 198.4 228 51.8
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 4.5e-47 192.2 243 47.7
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 2.9e-46 189.5 227 50.2
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 5.0e-46 188.7 227 49.8
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 8.5e-46 188.0 227 49.8
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 2.1e-44 183.3 228 48.7
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 3.6e-44 182.6 227 49.8
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 3.6e-44 182.6 225 47.1
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 6.1e-44 181.8 233 45.5
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 6.1e-44 181.8 227 48.9
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 1.4e-43 180.6 228 48.2
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 1.8e-43 180.3 227 47.1
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 2.3e-43 179.9 227 45.8
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 3.9e-43 179.1 247 45.3
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 5.1e-43 178.7 227 48.9
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 8.8e-43 177.9 246 45.9
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 8.8e-43 177.9 247 44.9
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 8.8e-43 177.9 228 46.1
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 1.1e-42 177.6 228 46.5
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 2.0e-42 176.8 228 46.1
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 2.6e-42 176.4 226 49.1
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 5.7e-42 175.3 228 46.5
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 7.4e-42 174.9 240 47.5
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 9.7e-42 174.5 247 44.5
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 9.7e-42 174.5 238 46.6
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 1.7e-41 173.7 228 46.1
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 2.2e-41 173.3 242 45.5
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 3.7e-41 172.6 232 46.1
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 4.8e-41 172.2 247 44.9
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 6.3e-41 171.8 232 46.1
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 8.2e-41 171.4 232 46.1
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 1.4e-40 170.6 224 45.5
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 1.4e-40 170.6 227 43.2
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 1.8e-40 170.2 237 45.1
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 3.1e-40 169.5 234 45.7
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 4.1e-40 169.1 234 45.3
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 5.3e-40 168.7 227 44.9
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 5.3e-40 168.7 233 45.5
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 6.9e-40 168.3 230 43.5
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 1.2e-39 167.5 224 45.5
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 2.0e-39 166.8 228 47.4
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 5.9e-39 165.2 253 41.9
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 7.7e-39 164.9 229 44.1
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 7.7e-39 164.9 215 45.6
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 7.7e-39 164.9 253 42.7
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 1.0e-38 164.5 239 43.5
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 1.0e-38 164.5 230 45.2
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 5.0e-38 162.2 237 44.3
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 5.0e-38 162.2 240 43.8
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 1.4e-37 160.6 226 45.1
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 2.5e-37 159.8 228 45.2
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 7.2e-37 158.3 227 40.5
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 7.2e-37 158.3 226 46.0
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 7.2e-37 158.3 232 42.7
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 1.2e-36 157.5 242 40.9
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 2.1e-36 156.8 235 44.3
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 3.6e-36 156.0 253 39.9
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 1.4e-35 154.1 195 47.2
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 1.8e-35 153.7 231 43.7
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 2.3e-35 153.3 248 42.3
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 2.3e-35 153.3 222 45.5
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 3.0e-35 152.9 233 43.3
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 8.8e-35 151.4 293 37.2
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 1.5e-34 150.6 227 41.4
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 5.7e-34 148.7 205 45.9
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 1.3e-33 147.5 238 42.9
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 1.7e-33 147.1 234 42.3
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 3.7e-33 146.0 251 39.4
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 1.1e-32 144.4 208 43.8
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 7.0e-32 141.7 200 47.5
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 9.1e-32 141.4 233 42.5
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 9.1e-32 141.4 227 40.5
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 2.6e-31 139.8 197 43.7
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 4.5e-31 139.0 201 41.3
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 1.0e-30 137.9 217 41.5
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 2.2e-30 136.7 203 43.8
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 6.5e-30 135.2 226 39.4
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 2.5e-29 133.3 194 42.8
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.7e-25 120.6 195 37.4
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 8.2e-25 118.2 254 34.6
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 7.0e-24 115.2 286 34.6
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 2.0e-23 113.6 100 55.0
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 2.7e-23 113.2 141 45.4
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 1.0e-22 111.3 103 55.3
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 2.2e-22 110.2 226 37.6
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 2.9e-22 109.8 117 50.4
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 3.8e-22 109.4 98 56.1
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 1.9e-21 107.1 171 42.7
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.2e-21 105.9 96 53.1
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 7.2e-21 105.1 118 50.8
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 9.4e-21 104.8 118 50.8
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 2.1e-20 103.6 113 50.4
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 4.7e-20 102.4 259 32.4
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 4.7e-20 102.4 262 33.2
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 1.5e-18 97.4 249 30.1
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 6.3e-17 92.0 167 35.9
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.4e-16 90.9 278 32.4
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 2.4e-16 90.1 247 30.4
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 3.5e-15 86.3 97 46.4
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 7.7e-15 85.1 160 38.1
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 1.0e-14 84.7 160 38.1
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 3.2e-13 79.7 62 62.9
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 3.2e-13 79.7 163 41.7
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 7.2e-13 78.6 62 58.1
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.2e-12 77.8 62 54.8
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 6.1e-12 75.5 128 42.2
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 1.0e-11 74.7 50 66.0
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 2.3e-11 73.6 96 41.7
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 5.2e-11 72.4 219 32.0
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 7.5e-10 68.6 129 40.3
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 2.8e-09 66.6 166 33.7
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 2.8e-09 66.6 223 28.3
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 3.7e-09 66.2 66 50.0
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 1.1e-08 64.7 139 36.0
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 5.9e-07 58.9 120 38.3
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.9e-06 56.6 140 35.7
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 3.8e-06 56.2 156 30.8
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 3.8e-06 56.2 62 45.2
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 5.0e-06 55.8 139 33.1


User provided reference genes

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