Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 5.9e-65 250.8 129 100.0
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 8.2e-59 230.3 127 92.9
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 2.2e-56 222.2 124 91.1
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 2.5e-55 218.8 124 88.7
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 2.5e-55 218.8 124 88.7
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 6.1e-54 214.2 128 86.7
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 6.1e-54 214.2 128 86.7
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 7.9e-54 213.8 126 88.1
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 7.9e-54 213.8 126 88.1
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 2.4e-50 202.2 130 80.8
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 2.4e-50 202.2 126 83.3
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 2.9e-48 195.3 135 79.3
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 1.1e-47 193.4 129 81.4
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 2.2e-43 179.1 133 73.7
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 2.1e-38 162.5 123 69.1
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 2.7e-38 162.2 120 72.5
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 1.0e-37 160.2 129 69.0
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 4.0e-37 158.3 126 69.8
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 1.2e-36 156.8 129 69.0
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 2.0e-36 156.0 131 64.9
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 2.6e-36 155.6 135 65.2
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 3.4e-36 155.2 131 64.1
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 4.4e-36 154.8 133 63.9
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 5.7e-36 154.5 122 65.6
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 7.5e-36 154.1 136 62.5
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 9.8e-36 153.7 129 65.9
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 9.8e-36 153.7 136 61.8
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 9.8e-36 153.7 136 61.8
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 1.3e-35 153.3 135 64.4
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 1.3e-35 153.3 135 64.4
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 2.8e-35 152.1 122 66.4
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 1.8e-34 149.4 126 64.3
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 1.8e-34 149.4 121 66.1
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 5.4e-34 147.9 124 65.3
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 7.0e-34 147.5 128 64.1
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 9.1e-34 147.1 123 63.4
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 1.6e-33 146.4 121 65.3
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 2.7e-33 145.6 128 65.6
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 2.7e-33 145.6 131 63.4
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 2.7e-33 145.6 121 63.6
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 3.5e-33 145.2 133 60.9
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 4.5e-33 144.8 115 65.2
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 5.9e-33 144.4 128 64.8
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 5.9e-33 144.4 128 63.3
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 7.7e-33 144.1 133 59.4
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 7.7e-33 144.1 121 64.5
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.3e-32 143.3 117 63.2
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 1.7e-32 142.9 131 61.8
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 1.7e-32 142.9 121 64.5
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 2.3e-32 142.5 116 64.7
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 2.3e-32 142.5 130 60.8
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 5.0e-32 141.4 128 61.7
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 6.5e-32 141.0 121 65.3
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 6.5e-32 141.0 132 62.1
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 6.5e-32 141.0 116 63.8
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 1.1e-31 140.2 128 64.1
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 1.1e-31 140.2 128 64.1
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 1.5e-31 139.8 118 62.7
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 3.2e-31 138.7 123 61.8
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 5.5e-31 137.9 127 59.1
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 9.5e-31 137.1 129 62.8
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 2.1e-30 136.0 114 64.9
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 2.8e-30 135.6 129 62.8
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 2.8e-30 135.6 125 56.8
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 2.8e-30 135.6 128 60.9
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 4.7e-30 134.8 135 59.3
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 1.0e-29 133.7 124 58.1
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.0e-29 133.7 121 62.0
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.8e-29 132.9 125 60.0
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 1.8e-29 132.9 132 57.6
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 2.3e-29 132.5 125 60.0
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 6.8e-29 131.0 125 60.0
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 6.8e-29 131.0 121 59.5
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 6.8e-29 131.0 139 55.4
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 2.0e-28 129.4 106 64.2
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 2.0e-28 129.4 104 63.5
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 3.4e-28 128.6 129 57.4
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 5.7e-28 127.9 86 76.7
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 5.7e-28 127.9 125 57.6
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 9.8e-28 127.1 122 55.7
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 9.8e-28 127.1 125 57.6
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 1.7e-27 126.3 125 56.8
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 2.8e-27 125.6 129 55.8
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 4.9e-27 124.8 104 64.4
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 4.9e-27 124.8 113 60.2
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 1.4e-26 123.2 106 61.3
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 3.1e-26 122.1 116 60.3
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 4.1e-26 121.7 128 54.7
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 4.5e-25 118.2 111 57.7
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 1.0e-24 117.1 125 53.6
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 8.6e-24 114.0 126 53.2
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 3.3e-23 112.1 115 55.7
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 4.3e-23 111.7 121 52.1
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 7.3e-23 110.9 122 51.6
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 1.2e-20 103.6 87 60.9
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 3.2e-18 95.5 129 43.4
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 1.9e-15 86.3 117 42.7
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 3.7e-11 72.0 45 73.3
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 6.4e-11 71.2 79 45.6
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 6.6e-08 61.2 70 45.7
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 6.6e-08 61.2 70 45.7
SMO358G0741 Selaginella moellendorffii HOM05D020496 ORTHO05D009197 6.2e-06 54.7 83 36.1
CAN.G65.47 Capsicum annuum HOM05D000789 ORTHO05D000897 8.1e-06 54.3 79 36.7
CDE04G1622 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 8.1e-06 54.3 77 40.3


User provided reference genes

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