Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 2.8e-64 248.4 124 100.0
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.8e-64 248.4 124 100.0
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.8e-64 248.4 124 100.0
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 6.2e-64 247.3 124 99.2
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 6.2e-64 247.3 124 99.2
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 1.4e-63 246.1 124 98.4
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 1.4e-63 246.1 124 98.4
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 1.4e-63 246.1 124 98.4
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 1.4e-63 246.1 124 98.4
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 1.4e-63 246.1 124 98.4
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 1.4e-63 246.1 124 98.4
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.8e-63 245.7 124 98.4
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 2.4e-63 245.4 124 97.6
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 2.4e-63 245.4 124 97.6
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 1.7e-61 239.2 124 94.4
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 3.8e-61 238.0 124 93.5
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 1.1e-60 236.5 124 92.7
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.9e-60 235.7 124 92.7
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 1.9e-60 235.7 124 91.9
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 2.5e-60 235.3 124 91.9
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 2.5e-60 235.3 124 91.1
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.5e-60 235.3 124 91.1
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 2.5e-60 235.3 124 91.1
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 2.5e-60 235.3 124 91.1
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 3.2e-60 235.0 124 91.9
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 3.2e-60 235.0 124 91.9
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 4.2e-60 234.6 143 85.3
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 5.5e-60 234.2 124 90.3
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 5.5e-60 234.2 124 91.1
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 7.1e-60 233.8 124 91.1
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 7.1e-60 233.8 124 89.5
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 7.1e-60 233.8 124 91.9
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 7.1e-60 233.8 124 91.9
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 7.1e-60 233.8 124 91.9
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 1.2e-59 233.0 124 91.1
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 1.2e-59 233.0 124 91.1
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 2.7e-59 231.9 124 91.1
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 2.7e-59 231.9 124 90.3
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 2.7e-59 231.9 124 90.3
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 3.5e-59 231.5 124 89.5
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 4.6e-59 231.1 120 93.3
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 6.0e-59 230.7 124 89.5
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 6.0e-59 230.7 124 89.5
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 7.9e-59 230.3 124 90.3
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 7.9e-59 230.3 124 89.5
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.0e-58 229.9 124 91.1
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 1.0e-58 229.9 124 88.7
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 1.0e-58 229.9 124 88.7
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 1.0e-58 229.9 124 88.7
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 1.0e-58 229.9 124 89.5
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.3e-58 229.6 124 91.1
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.3e-58 229.6 124 89.5
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 1.3e-58 229.6 124 90.3
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.8e-58 229.2 124 89.5
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 1.8e-58 229.2 121 90.9
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 2.3e-58 228.8 124 88.7
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 3.0e-58 228.4 124 88.7
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 3.0e-58 228.4 124 88.7
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 3.0e-58 228.4 124 89.5
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 3.9e-58 228.0 124 88.7
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 3.9e-58 228.0 124 88.7
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 3.9e-58 228.0 124 88.7
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 5.1e-58 227.6 124 90.3
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 5.1e-58 227.6 124 87.9
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 5.1e-58 227.6 124 87.9
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 6.7e-58 227.3 124 88.7
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 6.7e-58 227.3 124 88.7
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 8.7e-58 226.9 124 88.7
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 8.7e-58 226.9 124 87.9
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.1e-57 226.5 124 87.9
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.5e-57 226.1 137 82.5
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 1.5e-57 226.1 124 87.9
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 1.5e-57 226.1 124 88.7
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.9e-57 225.7 122 90.2
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.9e-57 225.7 124 88.7
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.9e-57 225.7 124 88.7
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 1.9e-57 225.7 124 87.1
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.5e-57 225.3 124 86.3
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 2.5e-57 225.3 124 87.1
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 2.5e-57 225.3 124 87.1
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 2.5e-57 225.3 124 86.3
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 3.3e-57 224.9 124 88.7
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 3.3e-57 224.9 124 86.3
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 3.3e-57 224.9 124 88.7
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 5.7e-57 224.2 124 86.3
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 7.4e-57 223.8 124 86.3
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 9.6e-57 223.4 124 85.5
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 9.6e-57 223.4 124 86.3
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 9.6e-57 223.4 124 87.1
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 1.3e-56 223.0 124 85.5
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 1.3e-56 223.0 133 84.2
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 1.3e-56 223.0 124 86.3
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.3e-56 223.0 124 86.3
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.6e-56 222.6 124 86.3
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 1.6e-56 222.6 124 86.3
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 2.1e-56 222.2 124 87.1
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 2.1e-56 222.2 124 87.1
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 2.8e-56 221.9 124 87.1
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 2.8e-56 221.9 124 85.5
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 2.8e-56 221.9 124 85.5
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.8e-56 221.9 124 84.7
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 4.8e-56 221.1 124 84.7
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 4.8e-56 221.1 124 84.7
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 4.8e-56 221.1 124 84.7
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 4.8e-56 221.1 124 86.3
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 4.8e-56 221.1 124 83.9
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 6.2e-56 220.7 124 85.5
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 8.2e-56 220.3 124 83.9
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 8.2e-56 220.3 124 86.3
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 1.1e-55 219.9 124 84.7
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 3.1e-55 218.4 124 84.7
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 3.1e-55 218.4 130 83.8
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 3.1e-55 218.4 122 84.4
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 4.1e-55 218.0 124 83.1
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 5.3e-55 217.6 122 84.4
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.5e-54 216.1 120 85.0
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.5e-54 216.1 120 85.0
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.0e-54 215.7 122 86.9
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 4.5e-54 214.5 124 82.3
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 4.5e-54 214.5 124 83.1
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 4.5e-54 214.5 124 84.7
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 4.5e-54 214.5 145 75.2
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 5.8e-54 214.2 138 78.3
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.7e-53 212.6 140 76.4
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.2e-53 212.2 124 82.3
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 8.4e-53 210.3 143 74.8
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 4.2e-52 208.0 117 90.6
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 1.6e-51 206.1 123 78.9
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 5.1e-50 201.1 122 77.9
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 1.1e-49 199.9 178 60.1
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 9.7e-49 196.8 124 76.6
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 9.7e-49 196.8 124 76.6
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 3.7e-48 194.9 148 69.6
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 6.3e-48 194.1 124 75.8
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 6.3e-48 194.1 124 75.8
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.8e-47 192.6 106 85.8
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 1.8e-47 192.6 124 74.2
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 3.1e-47 191.8 124 74.2
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.4e-44 183.0 109 78.9
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 1.4e-42 176.4 117 70.1
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 2.5e-41 172.2 124 73.4
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 1.8e-39 166.0 154 53.9
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 4.1e-39 164.9 124 67.7
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 4.1e-39 164.9 124 67.7
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 2.2e-37 159.1 122 59.8
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 6.5e-37 157.5 85 90.6
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 1.4e-36 156.4 124 66.9
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 1.4e-34 149.8 129 56.6
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 3.9e-34 148.3 89 83.1
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 2.0e-30 136.0 106 59.4
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 3.2e-28 128.6 95 66.3
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 5.5e-28 127.9 124 58.9
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.8e-23 112.8 124 50.0
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 1.5e-20 103.2 68 67.6
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 2.7e-19 99.0 52 92.3
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 3.0e-18 95.5 52 90.4
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 6.8e-18 94.4 49 93.9
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 9.1e-15 84.0 45 88.9
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.2e-14 83.6 40 92.5
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 1.3e-13 80.1 39 89.7
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 1.5e-12 76.6 47 78.7
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 5.5e-12 74.7 70 60.0
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.2e-11 73.6 35 91.4
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 4.0e-10 68.6 40 75.0
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 1.2e-09 67.0 35 85.7
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 2.0e-09 66.2 69 52.2


User provided reference genes

Program Settings