Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 8.8e-117 423.7 224 100.0
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 5.9e-105 384.4 224 89.3
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 2.5e-103 379.0 224 89.3
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 9.4e-103 377.1 223 89.2
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 2.1e-102 375.9 225 88.9
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 4.7e-102 374.8 223 88.8
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 6.1e-102 374.4 225 88.9
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 1.0e-101 373.6 224 88.4
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 4.2e-95 351.7 228 81.6
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 1.1e-87 327.0 229 78.6
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 1.9e-87 326.2 230 79.6
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 4.3e-87 325.1 231 77.5
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 1.4e-85 320.1 227 77.1
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 8.0e-78 294.3 234 70.5
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 6.6e-64 248.1 216 64.4
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 1.1e-63 247.3 211 64.9
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 1.2e-60 237.3 219 56.6
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 2.6e-60 236.1 192 62.5
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 6.4e-59 231.5 215 58.1
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 6.4e-59 231.5 206 59.7
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 2.4e-58 229.6 214 57.9
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 4.1e-58 228.8 218 59.2
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 1.2e-57 227.3 205 60.0
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 2.7e-57 226.1 194 62.4
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 3.5e-57 225.7 209 58.9
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 4.6e-57 225.3 205 60.0
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 4.6e-57 225.3 191 62.8
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 6.0e-57 224.9 193 62.7
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 6.0e-57 224.9 218 57.8
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 6.0e-57 224.9 210 60.0
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 7.8e-57 224.6 209 58.4
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 1.0e-56 224.2 208 61.1
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 1.3e-56 223.8 221 57.9
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 6.6e-56 221.5 217 56.2
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 1.1e-55 220.7 193 61.7
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 1.1e-55 220.7 226 55.3
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 1.1e-55 220.7 193 60.1
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 1.5e-55 220.3 223 54.3
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 1.5e-55 220.3 210 55.2
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 1.9e-55 219.9 211 56.9
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 2.5e-55 219.5 191 60.2
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 2.5e-55 219.5 226 54.4
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 3.3e-55 219.2 224 54.5
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 3.3e-55 219.2 193 61.7
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 5.6e-55 218.4 229 53.7
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 5.6e-55 218.4 218 55.5
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 7.3e-55 218.0 221 55.2
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 7.3e-55 218.0 194 62.9
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 9.6e-55 217.6 197 59.4
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 9.6e-55 217.6 224 54.0
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 1.2e-54 217.2 216 55.1
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 1.2e-54 217.2 214 55.1
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 1.6e-54 216.9 222 55.9
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 2.1e-54 216.5 191 59.7
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 2.8e-54 216.1 230 52.2
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 6.2e-54 214.9 207 55.1
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 8.1e-54 214.5 202 56.9
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 1.1e-53 214.2 212 57.5
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 1.4e-53 213.8 235 52.8
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 3.1e-53 212.6 219 53.0
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 3.1e-53 212.6 190 57.4
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 6.8e-53 211.5 230 53.5
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 2.0e-52 209.9 163 63.2
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 3.4e-52 209.1 230 53.9
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 4.4e-52 208.8 187 57.8
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 5.8e-52 208.4 205 54.1
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 1.7e-51 206.8 166 66.3
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 2.2e-51 206.5 207 53.1
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 2.2e-51 206.5 223 51.6
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 2.9e-51 206.1 207 52.7
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 1.1e-50 204.1 194 56.2
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 5.4e-50 201.8 193 56.0
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 9.3e-50 201.1 197 55.3
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 2.7e-49 199.5 167 65.3
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 4.6e-49 198.7 268 46.3
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 1.3e-48 197.2 200 54.5
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 2.5e-47 193.0 162 62.3
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 2.1e-46 189.9 168 61.3
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 6.9e-45 184.9 194 51.5
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 1.5e-44 183.7 198 53.0
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 4.4e-44 182.2 190 53.2
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 6.4e-43 178.3 169 57.4
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 9.3e-42 174.5 184 52.2
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.6e-41 173.7 184 51.6
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 6.0e-41 171.8 240 43.3
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.5e-39 167.2 225 43.1
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 9.6e-39 164.5 139 64.7
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 4.0e-37 159.1 167 49.1
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 2.2e-35 153.3 208 48.1
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 4.9e-35 152.1 208 48.1
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 8.4e-35 151.4 149 54.4
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 2.1e-33 146.7 123 59.3
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 2.7e-33 146.4 190 44.2
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 1.8e-32 143.7 171 43.3
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 3.9e-32 142.5 210 42.9
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 1.1e-31 141.0 166 49.4
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.5e-28 130.6 134 52.2
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 6.0e-25 118.6 105 57.1
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.3e-22 110.9 89 64.0
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 2.0e-20 103.6 90 57.8
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 2.5e-18 96.7 73 65.8
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 5.5e-18 95.5 109 49.5
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 1.6e-17 94.0 118 45.8
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 6.1e-17 92.0 237 31.2
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 2.1e-09 67.0 89 44.9
Dinv39425 Davidia involucrata HOM05D002064 ORTHO05D002118 3.7e-06 56.2 47 57.4
SGA_v2.0_scaffold54G19517 Striga asiatica HOM05D007221 ORTHO05D009204 4.8e-06 55.8 103 35.9


User provided reference genes

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