Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 0.0e+00 1591.6 838 100.0
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 0.0e+00 1176.4 852 75.9
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 0.0e+00 1129.0 850 75.1
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 0.0e+00 1126.7 849 74.4
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 0.0e+00 1118.6 849 74.0
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 0.0e+00 1118.6 851 74.7
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 0.0e+00 1101.7 859 72.5
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 1.9e-310 1068.9 869 71.9
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 5.0e-306 1054.3 850 70.8
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 1.9e-297 1025.8 865 70.6
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 4.0e-279 964.9 854 67.7
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 3.5e-275 951.8 852 65.4
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.1e-183 647.9 1047 44.7
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 5.9e-182 642.1 911 48.2
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 5.4e-111 406.4 1091 32.0
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 8.7e-109 399.1 1027 33.2
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 4.0e-106 390.2 1088 32.1
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 6.9e-106 389.4 1092 32.0
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 6.9e-106 389.4 886 36.8
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.9e-103 381.3 1090 31.2
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.4e-103 380.9 1088 31.2
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.2e-102 378.6 1090 31.7
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 8.7e-101 372.5 1095 31.6
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.1e-99 367.9 1098 30.2
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 4.8e-99 366.7 1090 31.0
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 4.8e-99 366.7 1081 31.6
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 2.4e-98 364.4 1088 30.7
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.7e-96 358.2 1094 30.8
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 2.9e-96 357.5 1084 30.9
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 8.4e-96 355.9 1089 30.2
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 2.4e-95 354.4 1089 30.4
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 9.3e-95 352.4 1023 32.6
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 2.1e-94 351.3 959 32.5
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 2.7e-94 350.9 969 32.1
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 2.7e-94 350.9 983 31.4
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 1.9e-92 344.7 1091 29.4
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.6e-91 341.7 988 31.4
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 8.1e-91 339.3 979 30.9
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 3.1e-90 337.4 962 31.1
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 2.0e-89 334.7 1055 29.5
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 4.5e-89 333.6 1029 31.8
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 6.5e-88 329.7 1051 30.9
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 2.7e-86 324.3 1035 30.6
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 3.0e-85 320.9 960 32.6
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 8.7e-85 319.3 1006 30.5
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 4.3e-84 317.0 1072 30.3
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 6.9e-82 309.7 996 31.2
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 5.9e-81 306.6 1026 29.6
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.0e-80 305.8 1077 29.5
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 1.2e-78 298.9 1019 29.3
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 2.7e-78 297.7 1052 29.8
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 3.6e-78 297.4 1020 28.6
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 1.8e-77 295.0 1050 29.2
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 2.8e-75 287.7 1077 28.8
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 8.2e-75 286.2 1019 29.3
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 1.8e-74 285.0 1085 28.0
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.4e-74 284.6 898 31.3
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 2.4e-74 284.6 1098 28.0
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 3.1e-74 284.3 1070 28.7
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 5.3e-74 283.5 1047 29.3
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 3.4e-73 280.8 881 30.4
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 3.4e-73 280.8 915 32.5
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 5.9e-73 280.0 1082 27.0
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 2.2e-72 278.1 1077 27.8
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 3.8e-72 277.3 1021 29.0
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 1.1e-71 275.8 1066 28.0
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 1.4e-71 275.4 1088 26.7
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 1.9e-71 275.0 1056 29.3
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 4.2e-71 273.9 1019 29.0
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 9.4e-71 272.7 1021 29.2
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 2.7e-70 271.2 1088 28.5
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 6.1e-70 270.0 1020 30.2
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 1.1e-68 265.8 927 29.9
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 7.4e-68 263.1 944 28.9
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 9.7e-68 262.7 1038 28.2
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 9.7e-68 262.7 1087 28.2
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.7e-67 261.9 897 30.4
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 4.8e-67 260.4 1061 28.5
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 8.2e-67 259.6 1053 27.0
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 2.7e-62 244.6 984 26.7
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 4.7e-62 243.8 895 29.1
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.0e-60 238.4 1044 26.4
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 5.7e-60 236.9 1057 26.3
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 2.0e-57 228.4 998 26.8
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 2.0e-57 228.4 1077 26.7
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.6e-57 228.0 957 29.3
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 3.5e-57 227.6 1014 26.1
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 4.5e-57 227.3 1050 26.4
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 2.5e-55 221.5 937 25.9
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 8.0e-54 216.5 914 27.5
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 1.8e-53 215.3 998 26.8
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 2.3e-53 214.9 633 31.6
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 6.7e-53 213.4 205 52.2
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 2.8e-51 208.0 823 31.0
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 6.3e-51 206.8 429 35.9
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 8.2e-51 206.5 837 27.0
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.4e-50 205.7 899 28.8
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.5e-47 195.7 594 32.2
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 2.1e-46 191.8 1040 24.5
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 1.4e-42 179.1 202 47.5
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 2.2e-40 171.8 323 38.4
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.2e-36 159.5 677 29.4
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 1.7e-35 155.6 118 60.2
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 3.1e-34 151.4 347 37.2
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 1.0e-32 146.4 647 28.0
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 9.2e-26 123.2 396 30.3
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 1.7e-24 119.0 279 31.9
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 2.5e-23 115.2 621 22.7
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 4.9e-19 100.9 1021 21.2
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 7.0e-18 97.1 975 22.2
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 2.0e-17 95.5 878 22.7
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 7.8e-17 93.6 180 30.6
C04p25240 Brassica napus HOM05D006788 ORTHO05D008265 1.7e-16 92.4 175 41.1
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 8.6e-16 90.1 844 20.0
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 3.6e-14 84.7 194 30.4
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 4.7e-14 84.3 168 30.4
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.7e-14 84.3 178 33.7
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 8.1e-14 83.6 168 32.7
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 5.2e-13 80.9 168 31.5
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 8.9e-13 80.1 807 22.6
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 2.0e-12 79.0 172 30.2
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.2e-09 69.7 745 23.4
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.2e-09 69.7 745 23.2
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 1.6e-09 69.3 222 30.2
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.6e-09 69.3 833 22.1
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.0e-08 66.6 827 21.6
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 3.0e-08 65.1 771 22.3
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.9e-08 64.7 170 31.8
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.1e-07 63.2 245 26.5
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 1.9e-07 62.4 799 23.0
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 2.5e-07 62.0 840 21.9
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 3.3e-07 61.6 749 20.8
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 5.6e-07 60.8 804 21.5
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 7.3e-07 60.5 818 20.8
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 1.2e-06 59.7 788 20.8
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 1.2e-06 59.7 606 21.6
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 1.6e-06 59.3 758 21.8
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 2.8e-06 58.5 172 26.7
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 3.6e-06 58.2 807 20.6
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 6.2e-06 57.4 172 26.7
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 6.2e-06 57.4 172 26.7


User provided reference genes

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