Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.4e-158 561.6 285 100.0
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 3.0e-130 468.8 257 90.7
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 6.7e-130 467.6 259 90.0
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 6.7e-130 467.6 259 90.0
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 3.3e-129 465.3 265 87.5
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 3.7e-128 461.8 259 88.4
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 2.2e-120 436.0 276 81.5
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.7e-120 435.3 267 85.0
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 4.8e-120 434.9 274 80.7
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 2.1e-115 419.5 259 83.0
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 2.2e-104 382.9 276 68.1
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 7.0e-103 377.9 274 68.2
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 4.6e-102 375.2 333 60.4
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 8.6e-101 370.9 270 66.7
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 1.1e-100 370.5 284 65.1
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 3.6e-99 365.5 275 66.5
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 6.2e-99 364.8 274 65.0
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 8.0e-99 364.4 257 68.5
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.1e-98 364.0 257 69.6
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.1e-98 364.0 258 68.2
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.1e-98 364.0 278 65.1
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.1e-98 364.0 259 68.7
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.8e-98 363.2 260 70.8
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 2.3e-98 362.8 284 62.0
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.2e-97 360.5 258 68.6
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.5e-97 357.8 258 65.5
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 2.2e-96 356.3 258 67.8
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 4.9e-96 355.1 255 66.3
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 8.3e-96 354.4 276 62.7
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.9e-95 353.2 267 67.8
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 2.4e-95 352.8 262 68.3
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.4e-95 352.8 257 66.1
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 3.2e-95 352.4 286 60.8
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 3.2e-95 352.4 276 62.3
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 5.4e-95 351.7 276 62.0
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 5.4e-95 351.7 267 67.4
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.1e-94 349.7 267 66.7
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 2.7e-94 349.4 258 65.1
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 4.6e-94 348.6 281 60.9
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 6.0e-94 348.2 288 58.3
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 2.3e-93 346.3 274 60.6
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 3.0e-93 345.9 276 61.2
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 3.9e-93 345.5 279 62.7
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 8.6e-93 344.4 284 61.6
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 1.5e-92 343.6 258 64.0
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 7.3e-92 341.3 261 65.1
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 6.2e-91 338.2 258 63.6
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 6.2e-91 338.2 256 63.3
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 1.1e-90 337.4 255 64.3
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 1.1e-90 337.4 292 58.9
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 5.2e-90 335.1 255 63.9
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 8.9e-90 334.3 255 63.9
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 2.6e-89 332.8 277 61.7
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 3.4e-89 332.4 258 62.0
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 7.5e-89 331.3 255 63.9
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 9.9e-89 330.9 274 57.3
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 1.3e-88 330.5 277 60.6
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 4.9e-88 328.6 282 58.9
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 6.4e-88 328.2 265 65.7
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 1.4e-87 327.0 266 61.3
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 1.4e-87 327.0 255 60.4
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 7.1e-87 324.7 255 59.2
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 7.1e-87 324.7 260 62.3
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 6.0e-86 321.6 267 60.7
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 5.1e-85 318.5 258 60.9
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 5.1e-85 318.5 263 59.3
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 8.6e-85 317.8 280 59.3
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 7.3e-84 314.7 283 55.5
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 1.2e-83 313.9 283 54.8
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 4.7e-83 312.0 272 56.2
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 8.1e-83 311.2 282 57.1
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 3.1e-82 309.3 275 57.1
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 2.6e-81 306.2 229 64.2
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 7.6e-81 304.7 282 53.5
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 9.9e-81 304.3 302 53.3
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 9.9e-81 304.3 201 71.1
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.7e-80 303.5 201 70.1
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 6.4e-80 301.6 280 52.5
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 1.1e-79 300.8 229 65.1
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 1.9e-79 300.1 257 58.4
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 2.4e-79 299.7 261 54.4
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.6e-78 297.0 257 58.8
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 2.1e-78 296.6 199 67.8
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 1.7e-77 293.5 228 64.5
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 3.6e-75 285.8 164 84.1
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 3.4e-73 279.3 173 72.8
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 4.4e-73 278.9 229 59.4
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 1.4e-71 273.9 257 52.9
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 9.3e-71 271.2 255 52.5
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.0e-69 267.7 275 52.4
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 1.8e-66 256.9 278 47.5
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 4.0e-66 255.8 192 67.2
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 5.3e-66 255.4 254 52.4
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 6.9e-66 255.0 266 47.0
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 5.4e-63 245.4 207 56.5
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.9e-60 236.9 252 46.8
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 4.3e-60 235.7 192 60.9
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 1.5e-57 227.3 257 43.6
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 8.4e-56 221.5 173 61.3
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-54 217.6 188 56.9
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 3.5e-54 216.1 185 57.8
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 4.9e-48 195.7 215 43.3
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 9.3e-47 191.4 284 41.2
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 1.2e-41 174.5 167 52.1
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 1.9e-39 167.2 124 63.7
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 3.0e-37 159.8 123 65.0
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.1e-36 157.9 172 47.1
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.7e-35 154.1 98 75.5
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.7e-35 154.1 95 80.0
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.5e-33 147.5 91 80.2
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.5e-31 139.0 204 39.7
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 5.5e-31 139.0 96 74.0
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 1.2e-30 137.9 93 71.0
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 4.7e-30 136.0 92 70.7
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 3.7e-27 126.3 107 57.9
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 1.3e-24 117.9 64 89.1
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 1.9e-23 114.0 171 36.3
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 2.5e-23 113.6 81 63.0
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 2.3e-21 107.1 76 64.5
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 3.0e-21 106.7 68 70.6
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 8.2e-19 98.6 95 56.8
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.1e-18 98.2 214 30.4
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 2.0e-17 94.0 127 43.3
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-14 84.0 55 67.3
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 2.8e-11 73.6 54 63.0
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 6.3e-11 72.4 86 47.7
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.4e-10 71.2 57 63.2
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 9.1e-10 68.6 96 43.8
Sp2g07060 Schrenkiella parvula HOM05D003281 ORTHO05D004128 9.1e-10 68.6 35 91.4
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.7e-09 67.0 67 52.2
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 5.9e-09 65.9 75 46.7
AUR62037909 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.2e-06 58.2 56 50.0


User provided reference genes

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