Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.7e-91 338.6 164 100.0
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 1.6e-83 312.8 165 92.1
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.4e-79 299.7 164 88.4
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 2.0e-78 295.8 158 91.1
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 2.0e-78 295.8 158 91.1
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 2.0e-78 295.8 158 91.1
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 5.0e-77 291.2 164 83.5
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 1.2e-75 286.6 164 84.1
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 5.2e-74 281.2 164 80.5
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 1.8e-71 272.7 164 81.7
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 2.6e-70 268.9 138 93.5
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 7.7e-62 240.7 167 70.1
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 1.6e-59 233.0 121 90.9
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 3.3e-52 208.8 167 62.9
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 2.7e-30 136.0 96 60.4
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 7.8e-30 134.4 96 58.3
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 7.8e-30 134.4 96 60.4
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 1.0e-29 134.0 99 57.6
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.3e-29 133.7 96 57.3
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.0e-29 132.5 96 57.3
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 6.6e-29 131.3 164 37.8
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 4.3e-28 128.6 121 43.0
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 4.3e-28 128.6 96 56.2
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 7.3e-28 127.9 124 50.8
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 3.6e-27 125.6 127 47.2
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 4.7e-27 125.2 130 43.8
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 4.7e-27 125.2 98 53.1
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 6.2e-27 124.8 130 44.6
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 6.2e-27 124.8 113 54.9
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 8.1e-27 124.4 94 55.3
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 8.1e-27 124.4 143 39.9
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.1e-26 124.0 166 37.3
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 1.1e-26 124.0 99 55.6
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.1e-26 124.0 96 57.3
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.1e-26 124.0 114 44.7
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.8e-26 123.2 95 54.7
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.8e-26 123.2 125 46.4
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 2.3e-26 122.9 95 54.7
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 3.1e-26 122.5 154 43.5
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.2e-26 121.7 110 51.8
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 5.2e-26 121.7 94 54.3
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 5.2e-26 121.7 118 44.1
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 5.2e-26 121.7 96 56.2
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 6.8e-26 121.3 120 44.2
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 6.8e-26 121.3 139 41.0
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 6.8e-26 121.3 119 49.6
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 8.9e-26 120.9 130 47.7
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 8.9e-26 120.9 96 53.1
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 8.9e-26 120.9 121 41.3
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 1.2e-25 120.6 125 47.2
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.2e-25 120.6 98 54.1
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 1.2e-25 120.6 128 43.8
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.5e-25 120.2 124 48.4
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.5e-25 120.2 139 40.3
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.5e-25 120.2 104 47.1
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 1.5e-25 120.2 146 36.3
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.5e-25 120.2 109 53.2
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 2.6e-25 119.4 100 51.0
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 2.6e-25 119.4 86 60.5
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 2.6e-25 119.4 115 49.6
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 4.4e-25 118.6 128 42.2
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 7.5e-25 117.9 131 45.0
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 7.5e-25 117.9 109 50.5
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 9.9e-25 117.5 131 42.7
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 9.9e-25 117.5 109 45.0
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 9.9e-25 117.5 109 43.1
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 9.9e-25 117.5 118 43.2
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.3e-24 117.1 116 42.2
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 1.3e-24 117.1 109 44.0
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 1.7e-24 116.7 127 43.3
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.7e-24 116.7 110 50.0
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 1.7e-24 116.7 102 52.9
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 2.2e-24 116.3 127 42.5
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 2.2e-24 116.3 118 44.1
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 2.2e-24 116.3 105 44.8
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.2e-24 116.3 105 44.8
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 2.2e-24 116.3 133 42.9
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.9e-24 115.9 105 44.8
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.9e-24 115.9 105 44.8
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 3.7e-24 115.5 103 43.7
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 4.9e-24 115.2 103 44.7
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 4.9e-24 115.2 109 44.0
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 4.9e-24 115.2 109 44.0
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 4.9e-24 115.2 139 41.7
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 6.4e-24 114.8 103 44.7
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 6.4e-24 114.8 110 50.0
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 8.3e-24 114.4 129 43.4
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 8.3e-24 114.4 93 48.4
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 8.3e-24 114.4 99 46.5
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 8.3e-24 114.4 120 45.8
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 8.3e-24 114.4 123 42.3
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 8.3e-24 114.4 98 49.0
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.1e-23 114.0 95 52.6
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.1e-23 114.0 124 46.8
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 1.4e-23 113.6 102 46.1
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 1.4e-23 113.6 98 48.0
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.4e-23 113.6 98 48.0
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 1.4e-23 113.6 118 44.1
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 1.9e-23 113.2 93 49.5
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.9e-23 113.2 95 52.6
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 2.4e-23 112.8 120 42.5
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 3.2e-23 112.5 129 42.6
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 3.2e-23 112.5 104 44.2
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 3.2e-23 112.5 100 48.0
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 4.1e-23 112.1 107 46.7
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 4.1e-23 112.1 104 44.2
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 9.2e-23 110.9 98 46.9
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 9.2e-23 110.9 109 48.6
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.6e-22 110.2 124 46.8
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.6e-22 110.2 129 39.5
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 1.6e-22 110.2 105 42.9
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 2.7e-22 109.4 82 54.9
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 4.6e-22 108.6 83 50.6
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 4.6e-22 108.6 128 39.1
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 6.0e-22 108.2 136 38.2
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 6.0e-22 108.2 114 43.0
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 7.8e-22 107.8 105 46.7
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 7.8e-22 107.8 124 40.3
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 1.0e-21 107.5 108 46.3
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.3e-21 107.1 93 47.3
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.3e-21 107.1 121 40.5
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.7e-21 106.7 123 42.3
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 1.7e-21 106.7 123 41.5
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 2.3e-21 106.3 109 39.4
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 3.0e-21 105.9 90 51.1
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.1e-20 104.0 98 42.9
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 1.5e-20 103.6 127 37.8
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.5e-20 103.6 128 38.3
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.5e-20 103.6 111 42.3
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 1.9e-20 103.2 103 40.8
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 1.9e-20 103.2 113 40.7
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 3.3e-20 102.4 118 39.8
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 4.3e-20 102.1 127 40.2
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 5.6e-20 101.7 106 40.6
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 5.6e-20 101.7 112 40.2
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 7.3e-20 101.3 96 44.8
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 9.5e-20 100.9 92 47.8
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 9.5e-20 100.9 96 44.8
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 9.5e-20 100.9 96 44.8
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.2e-19 100.5 126 38.9
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 2.8e-19 99.4 89 44.9
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.8e-19 99.4 129 41.1
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 4.7e-19 98.6 108 41.7
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 4.7e-19 98.6 83 47.0
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 6.2e-19 98.2 135 37.0
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 8.1e-19 97.8 86 47.7
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.1e-18 97.4 97 43.3
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.1e-18 97.4 86 47.7
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 1.8e-18 96.7 70 58.6
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 3.1e-18 95.9 136 37.5
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 4.0e-18 95.5 93 44.1
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 5.2e-18 95.1 93 44.1
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 6.8e-18 94.7 93 44.1
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.5e-17 93.6 106 43.4
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.5e-17 93.6 92 45.7
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 2.0e-17 93.2 93 43.0
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 2.6e-17 92.8 93 43.0
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 2.6e-17 92.8 93 43.0
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 2.6e-17 92.8 93 43.0
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 2.6e-17 92.8 93 43.0
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 4.4e-17 92.0 68 55.9
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 9.9e-17 90.9 97 46.4
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.3e-16 90.5 127 37.8
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.3e-16 90.5 102 41.2
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.7e-16 90.1 107 36.4
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 4.9e-16 88.6 89 44.9
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.1e-15 87.4 102 40.2
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 1.4e-15 87.0 89 39.3
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 3.2e-15 85.9 97 44.3
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 4.2e-15 85.5 93 45.2
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 6.0e-14 81.6 66 53.0
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 1.7e-13 80.1 114 36.0
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 8.7e-13 77.8 97 37.1
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 3.1e-10 69.3 62 45.2
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 1.1e-07 60.8 62 54.8
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 2.4e-07 59.7 59 39.0
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 2.4e-07 59.7 65 43.1
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 5.4e-07 58.5 82 32.9
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 1.2e-06 57.4 80 32.5
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 1.6e-06 57.0 70 32.9
CANSAT54G2708 Cannabis sativa HOM05D002444 ORTHO05D004748 6.0e-06 55.1 99 32.3


User provided reference genes

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