Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 9.3e-110 400.6 221 100.0
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 2.2e-95 352.8 219 86.3
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 1.1e-94 350.5 221 81.4
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 1.4e-86 323.6 221 75.6
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 3.5e-85 318.9 213 77.5
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 1.1e-83 313.9 219 81.3
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.5e-83 313.5 219 81.3
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 3.3e-83 312.4 219 80.8
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 2.4e-81 306.2 219 79.0
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 1.5e-80 303.5 220 79.5
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 5.0e-79 298.5 214 78.5
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 9.4e-78 294.3 220 77.7
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 1.8e-73 280.0 221 65.6
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 2.4e-73 279.6 233 61.8
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 3.1e-73 279.3 220 68.2
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.5e-72 276.9 230 62.2
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 2.6e-72 276.2 209 64.6
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 3.4e-72 275.8 219 63.0
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 1.0e-71 274.2 230 60.9
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.7e-71 273.5 221 62.9
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.7e-71 273.5 209 63.2
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.7e-71 273.5 209 63.2
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 8.5e-71 271.2 207 67.1
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.9e-70 270.0 209 65.6
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 4.2e-70 268.9 217 73.7
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 4.2e-70 268.9 228 60.5
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 5.5e-70 268.5 209 65.6
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 5.5e-70 268.5 219 64.8
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 1.2e-69 267.3 221 66.5
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 4.7e-69 265.4 249 57.4
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 6.1e-69 265.0 211 64.0
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.0e-68 264.2 209 65.6
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 1.0e-68 264.2 209 62.2
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 1.8e-68 263.5 210 63.3
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.8e-68 263.5 230 64.8
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 3.9e-68 262.3 229 63.8
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 5.1e-68 261.9 221 61.1
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 5.1e-68 261.9 220 61.8
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 1.1e-67 260.8 207 67.6
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 2.0e-67 260.0 209 62.2
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 2.6e-67 259.6 199 65.8
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 5.7e-67 258.5 222 59.9
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.7e-66 256.9 221 60.6
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 1.7e-66 256.9 210 60.5
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 2.2e-66 256.5 221 66.1
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 6.3e-66 255.0 199 64.8
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.4e-65 253.8 221 58.8
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 3.1e-65 252.7 209 60.3
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 4.1e-65 252.3 210 60.5
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 5.3e-65 251.9 217 64.5
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 5.3e-65 251.9 210 60.5
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 7.0e-65 251.5 212 69.3
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 2.0e-64 250.0 229 58.5
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 3.5e-64 249.2 210 61.0
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 4.5e-64 248.8 210 59.5
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 4.5e-64 248.8 220 57.7
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 1.3e-63 247.3 202 62.9
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.7e-63 246.9 215 58.1
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 2.2e-63 246.5 222 59.5
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 2.9e-63 246.1 210 65.7
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 4.2e-62 242.3 207 58.9
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 5.5e-62 241.9 225 56.0
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 7.2e-62 241.5 205 61.5
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.1e-61 240.0 231 57.6
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.7e-61 238.8 210 65.2
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.8e-60 236.9 221 58.8
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 2.3e-60 236.5 186 64.5
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 5.2e-60 235.3 202 59.4
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 8.8e-60 234.6 233 54.1
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.1e-59 234.2 202 55.4
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.0e-59 233.4 214 56.5
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 2.0e-59 233.4 209 63.2
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 2.6e-59 233.0 218 52.8
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.3e-59 232.6 210 64.3
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.3e-59 232.6 210 64.3
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 5.7e-59 231.9 219 55.7
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.3e-58 230.7 214 55.6
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.7e-58 230.3 211 55.9
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 3.7e-58 229.2 219 55.3
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 4.8e-58 228.8 200 60.0
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 8.2e-58 228.0 196 59.7
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.1e-57 227.6 215 56.3
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.1e-57 227.6 207 57.0
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 2.4e-57 226.5 215 54.0
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 2.4e-57 226.5 215 54.0
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 4.1e-57 225.7 206 57.8
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 7.0e-57 224.9 215 56.3
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 1.2e-56 224.2 235 57.0
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 1.2e-56 224.2 220 51.8
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.0e-55 221.1 207 52.7
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 8.5e-55 218.0 208 62.5
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 8.5e-55 218.0 209 56.0
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 1.5e-54 217.2 222 52.7
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 4.2e-54 215.7 197 59.4
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 4.2e-54 215.7 197 59.4
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 9.4e-54 214.5 220 55.0
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 2.1e-53 213.4 220 50.0
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 8.0e-53 211.5 200 52.0
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 1.0e-52 211.1 195 57.4
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 6.8e-52 208.4 213 54.5
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.0e-51 206.8 213 54.0
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.0e-51 206.8 197 57.4
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.3e-50 204.1 197 56.9
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 2.2e-50 203.4 187 56.7
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.8e-50 202.2 222 50.5
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.8e-50 202.2 222 50.5
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.8e-49 200.3 219 56.2
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.8e-49 200.3 219 56.2
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 2.4e-49 199.9 204 54.9
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.4e-49 199.9 202 51.0
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 7.0e-49 198.4 211 56.4
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 1.6e-48 197.2 222 49.5
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.6e-48 197.2 222 49.5
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.9e-47 193.0 211 49.8
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.9e-47 193.0 211 49.8
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.9e-47 193.0 211 49.8
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 5.0e-47 192.2 193 51.8
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 8.5e-47 191.4 211 49.3
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.5e-46 189.9 218 49.5
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 7.2e-46 188.3 207 56.5
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.6e-45 187.2 198 51.0
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 2.1e-45 186.8 202 50.5
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 3.6e-45 186.0 143 66.4
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.8e-44 183.7 197 49.7
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 4.0e-44 182.6 197 49.2
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 5.2e-44 182.2 180 50.0
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 6.8e-44 181.8 203 48.8
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 8.8e-44 181.4 194 57.7
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 1.2e-43 181.0 167 56.3
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 2.6e-43 179.9 202 47.0
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 3.4e-43 179.5 199 49.7
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 9.8e-43 177.9 152 60.5
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 6.3e-42 175.3 203 50.2
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 5.9e-40 168.7 202 49.0
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 5.9e-40 168.7 202 49.0
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 2.3e-39 166.8 206 51.0
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 2.3e-39 166.8 200 51.5
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 2.9e-39 166.4 230 49.6
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 3.8e-39 166.0 210 43.8
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 3.8e-39 166.0 167 53.3
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 7.3e-38 161.8 206 49.0
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 7.3e-38 161.8 204 49.0
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.6e-37 160.6 206 48.5
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.6e-37 160.6 193 49.7
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 3.6e-37 159.5 219 47.9
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 8.0e-37 158.3 192 52.1
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 1.0e-36 157.9 163 58.9
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 1.2e-35 154.5 124 63.7
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 1.5e-35 154.1 191 42.9
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 4.4e-35 152.5 181 41.4
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 5.9e-32 142.1 197 47.2
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.0e-31 141.4 129 57.4
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 8.6e-31 138.3 222 40.5
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.2e-29 134.4 205 36.6
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 2.1e-29 133.7 153 45.1
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 1.0e-28 131.3 138 52.9
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 3.1e-28 129.8 207 35.7
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 1.3e-26 124.4 195 45.6
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 4.1e-25 119.4 164 47.0
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.2e-24 117.9 164 47.6
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 1.1e-17 94.7 76 64.5
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 5.4e-17 92.4 90 57.8
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 9.2e-17 91.7 90 50.0
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.6e-13 79.7 69 62.3
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 4.0e-12 76.3 65 58.5
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 1.3e-10 71.2 62 53.2
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 2.1e-08 63.9 157 31.8
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.1e-08 63.9 41 68.3
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 3.3e-06 56.6 210 24.3


User provided reference genes

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