Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 2.0e-225 785.4 392 100.0
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 1.6e-219 765.8 392 96.9
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 4.6e-214 747.7 387 95.9
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 6.1e-214 747.3 383 96.9
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 1.8e-213 745.7 394 94.9
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 1.1e-212 743.0 394 94.4
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 1.1e-210 736.5 392 93.6
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 5.3e-210 734.2 392 93.9
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 6.9e-210 733.8 392 93.9
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 2.5e-199 698.7 383 92.7
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 3.6e-190 668.3 392 85.5
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 2.2e-187 659.1 392 86.2
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 8.8e-181 637.1 408 80.4
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 4.1e-178 628.2 393 80.2
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 1.8e-157 559.7 393 69.7
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 2.1e-153 546.2 398 70.6
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 2.7e-153 545.8 395 70.4
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.3e-152 543.5 396 70.2
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.3e-152 543.5 396 70.2
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 2.3e-152 542.7 410 69.0
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 3.0e-152 542.3 393 68.2
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 3.9e-152 542.0 410 68.5
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 5.1e-152 541.6 394 69.5
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 6.6e-152 541.2 391 70.6
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 1.5e-151 540.0 394 69.5
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 3.3e-151 538.9 395 68.9
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.5e-151 537.3 397 69.8
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 2.8e-150 535.8 394 69.0
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 3.6e-150 535.4 391 69.8
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 1.1e-149 533.9 394 68.5
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 1.4e-149 533.5 386 68.1
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 1.8e-149 533.1 390 70.5
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 1.8e-149 533.1 394 68.5
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 4.0e-149 531.9 394 69.0
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 5.2e-149 531.6 394 68.3
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 6.8e-149 531.2 394 68.5
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 6.8e-149 531.2 393 66.9
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 1.5e-148 530.0 393 66.9
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 5.8e-148 528.1 396 67.7
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 7.6e-148 527.7 396 67.4
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 9.9e-148 527.3 397 66.0
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 9.9e-148 527.3 394 68.5
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 9.9e-148 527.3 394 67.5
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 9.9e-148 527.3 396 67.2
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.3e-147 526.9 397 68.3
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.3e-147 526.9 394 68.3
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 8.4e-147 524.2 400 66.2
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 1.4e-146 523.5 387 69.0
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 1.9e-146 523.1 393 66.4
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.2e-145 520.4 397 67.3
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 2.1e-145 519.6 393 67.9
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 2.1e-145 519.6 395 66.8
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 3.5e-145 518.8 393 65.6
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 7.8e-145 517.7 396 67.7
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 1.3e-144 516.9 392 67.3
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.0e-144 515.8 411 65.5
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 3.0e-144 515.8 392 67.1
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 3.9e-144 515.4 422 64.5
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 6.6e-144 514.6 395 66.3
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 6.6e-144 514.6 392 67.3
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.5e-143 512.7 400 67.5
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 3.3e-143 512.3 390 66.4
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 3.3e-143 512.3 394 67.0
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 2.4e-141 506.1 421 62.7
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 8.9e-141 504.2 395 65.8
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.5e-140 503.4 408 64.5
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 2.0e-140 503.1 395 65.1
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 3.4e-140 502.3 395 65.1
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 9.9e-140 500.7 395 65.3
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 4.9e-139 498.4 395 65.6
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 8.4e-139 497.7 422 61.4
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 5.4e-138 495.0 384 64.6
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 1.6e-137 493.4 392 65.1
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 1.6e-137 493.4 393 62.6
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 6.0e-137 491.5 389 64.0
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 1.7e-136 490.0 394 61.7
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 5.1e-136 488.4 441 59.2
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 2.5e-135 486.1 398 63.1
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 9.6e-135 484.2 396 64.4
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.8e-134 481.9 357 70.0
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 4.8e-134 481.9 394 63.7
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 8.1e-134 481.1 393 62.8
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 3.1e-133 479.2 396 63.4
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 1.5e-132 476.9 385 62.3
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 2.0e-132 476.5 404 60.9
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 1.3e-131 473.8 387 63.6
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 1.7e-131 473.4 396 62.4
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.9e-131 471.9 394 62.9
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 1.1e-127 460.7 390 62.1
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 2.5e-127 459.5 390 62.1
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 1.5e-124 450.3 387 60.5
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 1.1e-122 444.1 394 60.4
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.3e-120 436.4 427 56.0
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 3.1e-117 426.0 392 57.4
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.1e-117 426.0 388 58.5
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 5.3e-117 425.2 388 58.5
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 2.0e-116 423.3 306 70.3
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 3.4e-116 422.5 397 56.7
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.7e-115 420.2 389 56.8
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 8.4e-115 417.9 411 56.7
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 1.4e-109 400.6 394 53.8
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 3.2e-106 389.4 429 52.9
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 3.6e-105 386.0 375 55.7
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 6.1e-105 385.2 383 53.3
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 1.0e-104 384.4 271 70.1
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 5.3e-101 372.1 395 52.7
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 5.0e-99 365.5 393 52.4
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 1.1e-98 364.4 399 51.6
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 2.6e-95 353.2 307 62.5
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 1.8e-88 330.5 387 47.0
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 3.3e-87 326.2 422 47.6
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 4.4e-87 325.9 296 57.8
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 1.4e-85 320.9 376 47.6
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 1.2e-81 307.8 390 45.6
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 4.8e-78 295.8 417 42.2
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.1e-69 268.1 256 54.7
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 7.0e-69 265.4 236 56.4
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 1.3e-59 234.6 342 43.6
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 7.3e-58 228.8 358 43.3
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 5.9e-52 209.1 247 46.6
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 3.9e-51 206.5 157 66.9
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 1.2e-47 194.9 155 61.9
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 8.1e-33 145.6 112 67.9
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.4e-32 144.1 112 67.0
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.2e-32 142.9 112 67.0
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.9e-30 137.1 112 65.2
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 6.4e-30 136.0 116 64.7
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 3.9e-27 126.7 85 74.1
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 5.6e-26 122.9 96 70.8
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 1.4e-24 118.2 125 48.0
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 1.5e-23 114.8 93 57.0
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 8.7e-19 99.0 106 51.9
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 7.3e-18 95.9 79 60.8
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 6.2e-17 92.8 64 73.4
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 3.2e-13 80.5 60 65.0
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 3.2e-13 80.5 94 42.6
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 2.1e-12 77.8 334 25.1
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.0e-11 75.5 81 53.1
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-08 65.1 49 63.3
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 9.0e-08 62.4 71 46.5
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 3.4e-07 60.5 69 44.9


User provided reference genes

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