Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g04990 Schrenkiella parvula HOM05D003282 ORTHO05D003637 1.2e-95 353.2 185 100.0
BraA01t03034Z Brassica rapa HOM05D003282 ORTHO05D003637 1.4e-80 303.1 213 78.9
A01p28690 Brassica napus HOM05D003282 ORTHO05D003637 1.2e-79 300.1 213 78.4
C01p36330 Brassica napus HOM05D003282 ORTHO05D003637 3.5e-79 298.5 213 77.9
BolC1t03591H Brassica oleracea HOM05D003282 ORTHO05D003637 3.5e-79 298.5 213 77.9
BcaC06g31788 Brassica carinata HOM05D003282 ORTHO05D003637 1.0e-78 297.0 211 78.2
BcaC04g22171 Brassica carinata HOM05D003282 ORTHO05D003637 2.5e-77 292.4 209 78.0
C09p22500 Brassica napus HOM05D003282 ORTHO05D003637 2.5e-77 292.4 209 78.0
BolC9t55167H Brassica oleracea HOM05D003282 ORTHO05D003637 2.5e-77 292.4 209 78.0
Thhalv10024035m.g Eutrema salsugineum HOM05D003282 ORTHO05D003637 9.6e-77 290.4 209 77.0
BcaB04g20215 Brassica carinata HOM05D003282 ORTHO05D003637 1.6e-76 289.7 194 83.0
AT1G59590 Arabidopsis thaliana HOM05D003282 ORTHO05D003637 4.5e-74 281.6 213 75.1
BcaB07g31168 Brassica carinata HOM05D003282 ORTHO05D003637 9.9e-74 280.4 208 75.5
A09p18050 Brassica napus HOM05D003282 ORTHO05D003637 3.8e-73 278.5 209 75.6
BraA09t37437Z Brassica rapa HOM05D003282 ORTHO05D003637 3.8e-73 278.5 209 75.6
AL2G17480 Arabidopsis lyrata HOM05D003282 ORTHO05D003637 6.4e-73 277.7 213 74.2
BcaC02g10643 Brassica carinata HOM05D003282 ORTHO05D003637 5.6e-69 264.6 211 71.6
C04p26130 Brassica napus HOM05D003282 ORTHO05D003637 5.6e-69 264.6 211 71.6
Carub.0002s0586 Capsella rubella HOM05D003282 ORTHO05D003637 3.6e-68 261.9 214 70.1
CARHR283800 Cardamine hirsuta HOM05D003282 ORTHO05D003637 3.4e-66 255.4 208 70.7
Aa31LG2G10560 Aethionema arabicum HOM05D003282 ORTHO05D003637 9.0e-59 230.7 213 65.3
BolC4t24191H Brassica oleracea HOM05D003282 ORTHO05D003637 2.2e-57 226.1 142 85.9
Carub.0001s0962 Capsella rubella HOM05D003282 ORTHO05D003637 1.1e-43 180.6 215 54.4
CARHR010340 Cardamine hirsuta HOM05D003282 ORTHO05D003637 4.5e-42 175.3 181 59.1
Thhalv10008760m.g Eutrema salsugineum HOM05D003282 ORTHO05D003637 1.0e-41 174.1 213 54.5
BolC5t29586H Brassica oleracea HOM05D003282 ORTHO05D003637 5.5e-40 168.3 205 52.7
AT1G10220 Arabidopsis thaliana HOM05D003282 ORTHO05D003637 6.1e-39 164.9 208 52.4
BraA06t23902Z Brassica rapa HOM05D003282 ORTHO05D003637 1.4e-38 163.7 212 51.4
A06p06880 Brassica napus HOM05D002240 ORTHO05D002453 6.7e-38 161.4 186 55.4
C05p08360 Brassica napus HOM05D002240 ORTHO05D002453 8.8e-38 161.0 179 55.3
A09p65150 Brassica napus HOM05D002240 ORTHO05D002453 7.4e-37 157.9 185 54.1
BraA09t41858Z Brassica rapa HOM05D002240 ORTHO05D002453 7.4e-37 157.9 185 54.1
BcaC07g38543 Brassica carinata HOM05D003282 ORTHO05D003637 1.3e-36 157.1 201 51.7
C08p13520 Brassica napus HOM05D003282 ORTHO05D003637 1.3e-36 157.1 201 51.7
BolC8t48987H Brassica oleracea HOM05D003282 ORTHO05D003637 1.3e-36 157.1 201 51.7
THA.LOC104816757 Tarenaya hassleriana HOM05D003282 ORTHO05D003637 1.3e-36 157.1 222 50.9
BcaC07g41826 Brassica carinata HOM05D002240 ORTHO05D002453 2.8e-36 156.0 142 62.0
C08p49090 Brassica napus HOM05D002240 ORTHO05D002453 3.7e-36 155.6 142 62.0
BolC8t52441H Brassica oleracea HOM05D002240 ORTHO05D002453 3.7e-36 155.6 142 62.0
Sp1g08830 Schrenkiella parvula HOM05D003282 ORTHO05D003637 4.8e-36 155.2 213 49.3
A08p34100 Brassica napus HOM05D003282 ORTHO05D003637 1.5e-34 150.2 201 50.7
BraA08t35322Z Brassica rapa HOM05D003282 ORTHO05D003637 1.5e-34 150.2 192 52.1
BcaB08g37338 Brassica carinata HOM05D002240 ORTHO05D002453 9.4e-32 141.0 173 49.7
THA.LOC104819897 Tarenaya hassleriana HOM05D003282 ORTHO05D003637 3.7e-28 129.0 206 44.7
Aa31LG1G4690 Aethionema arabicum HOM05D003282 ORTHO05D003637 3.1e-19 99.4 75 68.0
QL12p038149 Quercus lobata HOM05D003282 ORTHO05D003637 1.2e-18 97.4 142 46.5
CiPaw.08G050400 Carya illinoinensis HOM05D003282 ORTHO05D003637 6.5e-17 91.7 149 43.0
Manes.18G046800 Manihot esculenta HOM05D003282 ORTHO05D003637 1.1e-16 90.9 154 40.3
ClCG05G020620 Citrullus lanatus HOM05D003282 ORTHO05D003637 1.9e-16 90.1 143 43.4
Sabra14G0009700 Salix brachista HOM05D003282 ORTHO05D003637 2.1e-15 86.7 158 38.6
Eucgr.F00084 Eucalyptus grandis HOM05D003282 ORTHO05D003637 2.7e-15 86.3 165 38.2
Sc02g0007910 Simmondsia chinensis HOM05D003282 ORTHO05D003637 8.0e-15 84.7 197 31.0
CiPaw.07G174500 Carya illinoinensis HOM05D003282 ORTHO05D003637 2.3e-14 83.2 146 40.4
COL.COLO4_07066 Corchorus olitorius HOM05D003282 ORTHO05D003637 3.0e-14 82.8 213 34.7
Thecc.08G088400 Theobroma cacao HOM05D003282 ORTHO05D003637 3.0e-14 82.8 168 36.9
Thecc.05G238800 Theobroma cacao HOM05D003282 ORTHO05D003637 4.0e-14 82.4 215 34.9
Glyma.06G046800 Glycine max HOM05D003282 ORTHO05D003637 5.2e-14 82.0 150 39.3
Gohir.A13G096700 Gossypium hirsutum HOM05D003282 ORTHO05D003637 5.2e-14 82.0 138 39.1
Lalb_Chr22g0355661 Lupinus albus HOM05D003282 ORTHO05D003637 2.0e-13 80.1 200 34.5
Oeu038172.1 Olea europaea HOM05D003282 ORTHO05D003637 2.0e-13 80.1 154 37.0
VMungo0647G2568 Vigna mungo HOM05D003282 ORTHO05D003637 2.0e-13 80.1 144 38.9
Sed0008207 Sechium edule HOM05D003282 ORTHO05D003637 2.6e-13 79.7 132 40.2
Lj5g0017072 Lotus japonicus HOM05D003282 ORTHO05D003637 3.4e-13 79.3 212 34.4
Manes.05G182200 Manihot esculenta HOM05D003282 ORTHO05D003637 3.4e-13 79.3 148 40.5
Gohir.D13G101800 Gossypium hirsutum HOM05D003282 ORTHO05D003637 4.4e-13 79.0 139 39.6
Gorai.013G114000 Gossypium raimondii HOM05D003282 ORTHO05D003637 4.4e-13 79.0 139 39.6
Psat5g038040 Pisum sativum HOM05D003282 ORTHO05D003637 4.4e-13 79.0 139 33.8
Glyma.04G046000 Glycine max HOM05D003282 ORTHO05D003637 5.7e-13 78.6 150 39.3
Phvul.001G028100 Phaseolus vulgaris HOM05D003282 ORTHO05D003637 7.5e-13 78.2 188 35.1
Duzib093G1075 Durio zibethinus HOM05D003282 ORTHO05D003637 9.8e-13 77.8 165 38.2
Lalb_Chr14g0368171 Lupinus albus HOM05D003282 ORTHO05D003637 1.7e-12 77.0 146 35.6
Potri.002G118200 Populus trichocarpa HOM05D003282 ORTHO05D003637 1.7e-12 77.0 181 34.8
Duzib041G0425 Durio zibethinus HOM05D003282 ORTHO05D003637 2.2e-12 76.6 229 36.2
TAR625G1300 Trochodendron aralioides HOM05D003282 ORTHO05D003637 2.2e-12 76.6 201 33.3
COL.COLO4_28502 Corchorus olitorius HOM05D003282 ORTHO05D003637 2.8e-12 76.3 242 32.2
Lj1g0007382 Lotus japonicus HOM05D003282 ORTHO05D003637 3.7e-12 75.9 145 37.2
Nitab4.5_0002484g0080 Nicotiana tabacum HOM05D003282 ORTHO05D003637 3.7e-12 75.9 151 37.1
VMungo1309G1277 Vigna mungo HOM05D003282 ORTHO05D003637 3.7e-12 75.9 148 36.5
Solyc04g077810.1 Solanum lycopersicum HOM05D003282 ORTHO05D003637 6.3e-12 75.1 157 36.3
Lj4C71T11 Lonicera japonica HOM05D003282 ORTHO05D003637 8.3e-12 74.7 146 35.6
PGSC0003DMG400010618 Solanum tuberosum HOM05D003282 ORTHO05D003637 8.3e-12 74.7 150 36.7
Dinv44952 Davidia involucrata HOM05D003282 ORTHO05D003637 1.1e-11 74.3 150 39.3
Nitab4.5_0004654g0010 Nicotiana tabacum HOM05D003282 ORTHO05D003637 1.1e-11 74.3 149 34.9
TWI56G0432 Tripterygium wilfordii HOM05D003282 ORTHO05D003637 1.1e-11 74.3 149 37.6
Haze_22432 Corylus avellana HOM05D003282 ORTHO05D003637 2.4e-11 73.2 151 41.1
Potri.014G015800 Populus trichocarpa HOM05D003282 ORTHO05D003637 2.4e-11 73.2 139 36.0
Sopen04g031410 Solanum pennellii HOM05D003282 ORTHO05D003637 2.4e-11 73.2 155 36.1
Cfa013774 Carpinus fangiana HOM05D003282 ORTHO05D003637 3.1e-11 72.8 150 38.7
Cc10_g04990 Coffea canephora HOM05D003282 ORTHO05D003637 3.1e-11 72.8 222 29.7
Prupe.1G422400 Prunus persica HOM05D003282 ORTHO05D003637 4.1e-11 72.4 166 35.5
TWI12G0431 Tripterygium wilfordii HOM05D003282 ORTHO05D003637 4.1e-11 72.4 163 35.0
CANSAT25G2311 Cannabis sativa HOM05D003282 ORTHO05D003637 7.0e-11 71.6 77 48.1
Sabra02G0092800 Salix brachista HOM05D003282 ORTHO05D003637 7.0e-11 71.6 141 36.2
Glyma.14G089021 Glycine max HOM05D003282 ORTHO05D003637 9.1e-11 71.2 158 39.9
Ah.05g167090 Amaranthus hybridus HOM05D003282 ORTHO05D003637 1.2e-10 70.9 88 51.1
TPR.G33672 Trifolium pratense HOM05D003282 ORTHO05D003637 1.2e-10 70.9 149 35.6
CSS0046043 Camellia sinensis var. sinensis HOM05D003282 ORTHO05D003637 1.6e-10 70.5 152 34.2
Phvul.009G072000 Phaseolus vulgaris HOM05D003282 ORTHO05D003637 1.6e-10 70.5 148 35.8
MD15G1068500 Malus domestica HOM05D003282 ORTHO05D003637 2.0e-10 70.1 163 38.7
MELO3C016821.2 Cucumis melo HOM05D003282 ORTHO05D003637 3.5e-10 69.3 143 37.1
PGR083G0104 Punica granatum HOM05D003282 ORTHO05D003637 3.5e-10 69.3 224 30.8
Aqoxy5G00861 Aquilegia oxysepala HOM05D003282 ORTHO05D003637 4.5e-10 68.9 141 35.5
CsaV3_4G035060 Cucumis sativus L. HOM05D003282 ORTHO05D003637 4.5e-10 68.9 143 37.8
Actinidia08246 Actinidia chinensis HOM05D003282 ORTHO05D003637 5.9e-10 68.6 113 41.6
Nitab4.5_0008551g0010 Nicotiana tabacum HOM05D003282 ORTHO05D003637 7.7e-10 68.2 211 30.3
vmacro22051 Vaccinium macrocarpon HOM05D003282 ORTHO05D003637 7.7e-10 68.2 140 33.6
Medtr3g103190 Medicago truncatula HOM05D003282 ORTHO05D003637 1.0e-09 67.8 153 34.6
SalBow7G2612 Salvia bowleyana HOM05D003282 ORTHO05D003637 1.0e-09 67.8 128 39.1
Nitab4.5_0000800g0090 Nicotiana tabacum HOM05D003282 ORTHO05D003637 1.3e-09 67.4 119 39.5
Nitab4.5_0002314g0080 Nicotiana tabacum HOM05D003282 ORTHO05D003637 1.3e-09 67.4 209 30.1
Oeu016577.1 Olea europaea HOM05D003282 ORTHO05D003637 1.3e-09 67.4 217 30.9
Oeu037484.1 Olea europaea HOM05D003282 ORTHO05D003637 1.3e-09 67.4 106 43.4
Peaxi162Scf00081g00214 Petunia axillaris HOM05D003282 ORTHO05D003637 1.3e-09 67.4 194 33.5
Rhsim07G0219700 Rhododendron simsii HOM05D003282 ORTHO05D003637 1.3e-09 67.4 140 34.3
TAR381G0972 Trochodendron aralioides HOM05D003282 ORTHO05D003637 1.3e-09 67.4 140 33.6
Cpa.g.sc142.29 Carica papaya HOM05D003282 ORTHO05D003637 1.7e-09 67.0 164 35.4
MD08G1082000 Malus domestica HOM05D003282 ORTHO05D003637 1.7e-09 67.0 167 37.1
Psat6g018120 Pisum sativum HOM05D003282 ORTHO05D003637 1.7e-09 67.0 140 36.4
arahy.Tifrunner.gnm1.ann1.TP4UKQ Arachis hypogaea HOM05D003282 ORTHO05D003637 2.3e-09 66.6 160 35.0
Lalb_Chr11g0062891 Lupinus albus HOM05D003282 ORTHO05D003637 2.3e-09 66.6 100 39.0
HPP92_006077 Vanilla planifolia HOM05D003282 ORTHO05D003637 2.3e-09 66.6 143 35.0
Peaxi162Scf00160g00052 Petunia axillaris HOM05D003282 ORTHO05D003637 2.9e-09 66.2 140 35.0
Solyc12g088330.1 Solanum lycopersicum HOM05D003282 ORTHO05D003637 2.9e-09 66.2 134 33.6
HPP92_006072 Vanilla planifolia HOM05D003282 ORTHO05D003637 2.9e-09 66.2 142 33.8
Gohir.A02G080900 Gossypium hirsutum HOM05D003282 ORTHO05D003637 3.8e-09 65.9 155 36.8
Gorai.005G099300 Gossypium raimondii HOM05D003282 ORTHO05D003637 3.8e-09 65.9 147 36.7
Medtr1g017990 Medicago truncatula HOM05D003282 ORTHO05D003637 3.8e-09 65.9 138 36.2
Nitab4.5_0007031g0010 Nicotiana tabacum HOM05D003282 ORTHO05D003637 3.8e-09 65.9 121 38.0
arahy.Tifrunner.gnm1.ann1.L3I3WK Arachis hypogaea HOM05D003282 ORTHO05D003637 6.5e-09 65.1 73 49.3
AUR62037413 Chenopodium quinoa HOM05D003282 ORTHO05D003637 6.5e-09 65.1 151 35.1
Eucgr.F02249 Eucalyptus grandis HOM05D003282 ORTHO05D003637 6.5e-09 65.1 151 35.8
MBI16_g23892_MAGBIO Magnolia biondii HOM05D003282 ORTHO05D003637 6.5e-09 65.1 145 36.6
Actinidia10202 Actinidia chinensis HOM05D000139 ORTHO05D009860 8.6e-09 64.7 89 44.9
Gohir.D02G088600 Gossypium hirsutum HOM05D003282 ORTHO05D003637 8.6e-09 64.7 147 37.4
Atru.chr13.836 Acer truncatum HOM05D003282 ORTHO05D003637 1.1e-08 64.3 75 48.0
Ciclev10002231m.g Citrus clementina HOM05D003282 ORTHO05D003637 1.1e-08 64.3 106 37.7
Nn5g30605 Nelumbo nucifera HOM05D003282 ORTHO05D003637 1.1e-08 64.3 213 31.0
Oeu053615.1 Olea europaea HOM05D003282 ORTHO05D003637 1.9e-08 63.5 218 27.1
Oeu053619.1 Olea europaea HOM05D003282 ORTHO05D003637 1.9e-08 63.5 219 29.2
Oeu053620.1 Olea europaea HOM05D003282 ORTHO05D003637 1.9e-08 63.5 219 29.2
Sed0011240 Sechium edule HOM05D003282 ORTHO05D003637 1.9e-08 63.5 106 42.5
Nn1g04545 Nelumbo nucifera HOM05D003282 ORTHO05D003637 2.5e-08 63.2 160 33.1
CSS0025102 Camellia sinensis var. sinensis HOM05D003282 ORTHO05D003637 3.2e-08 62.8 146 33.6
DCAR_020050 Daucus carota HOM05D003282 ORTHO05D003637 3.2e-08 62.8 141 34.8
HanXRQChr05g0150961 Helianthus annuus HOM05D003282 ORTHO05D003637 4.2e-08 62.4 139 35.3
Prupe.2G244200 Prunus persica HOM05D003282 ORTHO05D003637 4.2e-08 62.4 210 30.0
CSS0044747 Camellia sinensis var. sinensis HOM05D003282 ORTHO05D003637 5.5e-08 62.0 146 33.6
Rhsim06G0062500 Rhododendron simsii HOM05D003282 ORTHO05D003637 5.5e-08 62.0 81 48.1
RcHm_v2.0_Chr6g0309661 Rosa chinensis HOM05D003282 ORTHO05D003637 5.5e-08 62.0 169 33.7
CAN.G724.28 Capsicum annuum HOM05D003282 ORTHO05D003637 7.2e-08 61.6 148 32.4
AUR62022478 Chenopodium quinoa HOM05D003282 ORTHO05D003637 7.2e-08 61.6 129 38.8
Sc24g0002380 Simmondsia chinensis HOM05D003282 ORTHO05D003637 9.5e-08 61.2 84 41.7
SalBow7G3247 Salvia bowleyana HOM05D003282 ORTHO05D003637 1.2e-07 60.8 84 40.5
Hma1.2p1_3174F.1_g333610 Hydrangea macrophylla HOM05D003282 ORTHO05D003637 1.6e-07 60.5 106 36.8
PGR031G0890 Punica granatum HOM05D003282 ORTHO05D003637 1.6e-07 60.5 142 33.1
Lsat_1_v5_gn_6_110941 Lactuca sativa HOM05D003282 ORTHO05D003637 2.1e-07 60.1 97 41.2
TPR.G37725 Trifolium pratense HOM05D003282 ORTHO05D003637 2.1e-07 60.1 153 34.0
DCAR_020051 Daucus carota HOM05D003282 ORTHO05D003637 2.8e-07 59.7 58 51.7
Gohir.A06G024200 Gossypium hirsutum HOM05D003282 ORTHO05D003637 2.8e-07 59.7 56 55.4
VMungo0464G1205 Vigna mungo HOM05D003282 ORTHO05D003637 3.6e-07 59.3 106 41.5
DCAR_008857 Daucus carota HOM05D003282 ORTHO05D003637 4.7e-07 58.9 162 33.3
FvH4_2g33050 Fragaria vesca HOM05D003282 ORTHO05D003637 4.7e-07 58.9 163 33.7
FAN24G0457 Fragaria x ananassa HOM05D003282 ORTHO05D003637 4.7e-07 58.9 163 33.7
HanXRQChr04g0102441 Helianthus annuus HOM05D003282 ORTHO05D003637 4.7e-07 58.9 62 43.5
MD07G1211400 Malus domestica HOM05D003282 ORTHO05D003637 8.0e-07 58.2 149 33.6
Migut.C00484 Erythranthe guttata HOM05D003282 ORTHO05D003637 1.0e-06 57.8 101 38.6
HanXRQChr12g0369291 Helianthus annuus HOM05D003282 ORTHO05D003637 1.0e-06 57.8 92 34.8
FvH4_7g23760 Fragaria vesca HOM05D003282 ORTHO05D003637 1.4e-06 57.4 154 33.8
FAN01G3110 Fragaria x ananassa HOM05D003282 ORTHO05D003637 1.4e-06 57.4 154 33.8
Gohir.D06G021300 Gossypium hirsutum HOM05D003282 ORTHO05D003637 1.4e-06 57.4 56 53.6
Gorai.010G025900 Gossypium raimondii HOM05D003282 ORTHO05D003637 1.4e-06 57.4 56 53.6
DCAR_012817 Daucus carota HOM05D003282 ORTHO05D003637 1.8e-06 57.0 142 31.0
Glyma.17G234800 Glycine max HOM05D003282 ORTHO05D003637 1.8e-06 57.0 224 30.4
unitig_8.g5044 Utricularia gibba HOM05D003282 ORTHO05D003637 1.8e-06 57.0 137 35.8
HPP92_023657 Vanilla planifolia HOM05D003282 ORTHO05D003637 1.8e-06 57.0 73 41.1
FAN20G2529 Fragaria x ananassa HOM05D003282 ORTHO05D003637 2.3e-06 56.6 163 33.1
FAN03G2845 Fragaria x ananassa HOM05D003282 ORTHO05D003637 3.0e-06 56.2 154 33.1
FAN06G1275 Fragaria x ananassa HOM05D003282 ORTHO05D003637 3.0e-06 56.2 154 33.1
FAN06G3692 Fragaria x ananassa HOM05D003282 ORTHO05D003637 3.0e-06 56.2 154 33.1
Hma1.2p1_0210F.1_g089450 Hydrangea macrophylla HOM05D003282 ORTHO05D003637 3.0e-06 56.2 138 32.6
HanXRQChr02g0039181 Helianthus annuus HOM05D003282 ORTHO05D003637 4.0e-06 55.8 157 32.5
MD01G1144800 Malus domestica HOM05D003282 ORTHO05D003637 4.0e-06 55.8 50 56.0
FAN27G3264 Fragaria x ananassa HOM05D003282 ORTHO05D003637 5.2e-06 55.5 163 33.1
HanXRQChr09g0266811 Helianthus annuus HOM05D003282 ORTHO05D003637 6.8e-06 55.1 139 31.7
Lsat_1_v5_gn_4_132700 Lactuca sativa HOM05D003282 ORTHO05D003637 6.8e-06 55.1 140 34.3


User provided reference genes

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