Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 4.3e-189 664.5 328 100.0
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 3.4e-170 601.7 328 89.3
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 1.8e-166 589.3 329 88.8
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 1.4e-163 579.7 326 88.7
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 1.3e-161 573.2 329 86.9
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 3.8e-161 571.6 326 87.1
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 1.5e-160 569.7 329 86.3
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 1.9e-160 569.3 326 86.8
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 3.2e-160 568.5 327 87.8
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 8.8e-158 560.5 329 85.1
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 7.5e-149 530.8 334 82.0
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 2.4e-139 499.2 428 64.0
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 3.9e-129 465.3 342 70.8
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 7.3e-120 434.5 346 64.5
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 4.0e-118 428.7 344 64.2
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 2.9e-116 422.5 346 63.0
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 4.9e-116 421.8 345 60.6
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 8.3e-116 421.0 348 62.9
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 5.4e-115 418.3 347 62.2
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 5.4e-115 418.3 346 61.3
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 1.7e-113 413.3 345 63.5
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 2.5e-112 409.5 338 61.2
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 1.6e-111 406.8 343 58.9
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 6.2e-111 404.8 347 59.4
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 6.8e-110 401.4 301 67.8
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 1.5e-109 400.2 345 59.4
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 2.9e-108 396.0 342 62.0
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 2.4e-107 392.9 345 60.9
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 5.4e-107 391.7 345 61.4
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 1.6e-106 390.2 344 59.0
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.5e-106 389.0 339 58.1
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 4.6e-106 388.7 335 57.9
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 7.8e-106 387.9 329 59.3
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 1.3e-105 387.1 346 55.8
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 5.1e-105 385.2 341 56.6
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 5.1e-105 385.2 345 59.4
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 8.6e-105 384.4 342 57.6
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 1.5e-104 383.6 278 68.0
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 4.3e-104 382.1 281 68.0
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 5.6e-104 381.7 345 58.6
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 2.1e-103 379.8 344 57.3
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 2.1e-103 379.8 351 55.6
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 2.8e-103 379.4 345 56.8
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 8.1e-103 377.9 326 59.8
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 6.8e-102 374.8 343 55.4
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 3.4e-101 372.5 335 56.7
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 3.8e-100 369.0 340 54.4
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 3.2e-99 365.9 345 53.6
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 3.2e-99 365.9 347 55.0
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 1.2e-98 364.0 343 54.5
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 7.8e-98 361.3 341 56.3
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 1.5e-96 357.1 350 55.7
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 2.5e-96 356.3 345 52.2
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 1.6e-95 353.6 342 55.3
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 2.1e-95 353.2 341 54.3
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 8.1e-95 351.3 341 54.3
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 1.8e-94 350.1 338 56.2
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 5.3e-94 348.6 340 53.8
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 3.4e-93 345.9 352 54.3
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 9.9e-93 344.4 323 54.8
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 2.9e-92 342.8 315 55.9
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 4.9e-92 342.0 315 57.1
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 8.4e-92 341.3 383 50.4
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 1.1e-91 340.9 339 53.1
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 2.4e-91 339.7 342 53.5
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 4.2e-91 339.0 314 56.1
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 2.7e-90 336.3 342 54.4
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 7.9e-90 334.7 347 53.3
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 3.9e-89 332.4 337 52.8
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 6.6e-89 331.6 340 52.4
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 6.6e-89 331.6 345 55.4
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 8.7e-89 331.3 342 51.8
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 2.5e-88 329.7 345 51.3
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 4.3e-88 328.9 353 51.0
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 1.6e-87 327.0 334 53.0
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 1.5e-85 320.5 336 53.9
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 1.5e-85 320.5 299 56.9
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 4.5e-85 318.9 312 54.5
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 4.5e-85 318.9 277 57.0
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 1.7e-84 317.0 347 49.3
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 5.5e-83 312.0 338 53.6
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 5.5e-83 312.0 285 56.1
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 2.1e-82 310.1 339 49.6
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 6.7e-81 305.1 295 53.6
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 1.5e-80 303.9 315 53.3
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 3.8e-76 289.3 337 49.0
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 6.5e-76 288.5 343 46.1
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 1.4e-75 287.3 297 50.2
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 3.1e-62 243.0 212 58.5
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 1.2e-61 241.1 212 57.5
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 1.7e-55 220.7 198 57.1
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 4.7e-50 202.6 284 39.4
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 5.7e-48 195.7 175 60.0
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 1.8e-46 190.7 300 43.7
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 3.5e-45 186.4 128 75.8
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 2.5e-43 180.3 192 56.8
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 2.7e-42 176.8 174 52.9
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 1.2e-40 171.4 137 59.9
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 2.7e-37 160.2 110 75.5
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 1.3e-31 141.4 266 32.3
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 2.4e-30 137.1 262 35.5
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 3.1e-30 136.7 311 31.8
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 1.2e-29 134.8 200 42.5
Os07g0586000 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 1.3e-28 131.3 167 43.1
SEGI_02529 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.3e-25 120.6 169 36.1
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 1.8e-22 110.9 88 61.4
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 1.7e-20 104.4 98 51.0
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 1.2e-18 98.2 124 46.8
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 4.0e-17 93.2 86 47.7
Psat7g107960 Pisum sativum HOM05D006958 ORTHO05D008814 7.0e-14 82.4 104 45.2
Glyma.07G264001 Glycine max HOM05D006958 ORTHO05D008814 1.0e-09 68.6 75 52.0
Ah.09g227430 Amaranthus hybridus HOM05D006958 ORTHO05D008814 1.9e-06 57.8 66 50.0
Psat0s3396g0160 Pisum sativum HOM05D006958 ORTHO05D008814 3.2e-06 57.0 37 67.6


User provided reference genes

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