Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g04770 Schrenkiella parvula HOM05D007210 ORTHO05D006152 7.1e-77 290.4 138 100.0
AT1G63190 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.5e-29 133.3 117 58.1
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.1e-28 129.4 117 56.4
Carub.0002s0174 Capsella rubella HOM05D007210 ORTHO05D006152 3.6e-28 128.6 117 56.4
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 6.1e-28 127.9 117 56.4
AL2G12300 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.4e-27 126.7 118 57.6
AL2G12320 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.2e-27 124.8 117 56.4
Carub.0002s0166 Capsella rubella HOM05D007210 ORTHO05D006152 8.9e-27 124.0 117 54.7
AT1G63200 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.2e-26 123.6 121 51.2
Carub.0002s0167 Capsella rubella HOM05D007210 ORTHO05D006152 1.5e-26 123.2 116 51.7
AL2G12260 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.0e-26 122.9 117 51.3
Carub.0002s0168 Capsella rubella HOM05D007210 ORTHO05D006152 3.4e-26 122.1 117 53.8
AT1G63206 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 2.2e-25 119.4 137 51.8
AL2G12250 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.9e-25 118.2 119 50.4
Sp2g01360 Schrenkiella parvula HOM05D007210 ORTHO05D006152 8.3e-25 117.5 122 51.6
AL2G12270 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.8e-24 116.3 118 50.8
BraA05t19960Z Brassica rapa HOM05D007210 ORTHO05D006152 9.2e-24 114.0 124 46.8
Thhalv10023855m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 9.2e-24 114.0 117 47.0
A05p10190 Brassica napus HOM05D007210 ORTHO05D006152 1.2e-23 113.6 120 48.3
Carub.0002s0173 Capsella rubella HOM05D007210 ORTHO05D006152 1.6e-23 113.2 130 46.9
Thhalv10023669m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 1.6e-23 113.2 117 55.6
Carub.0002s0171 Capsella rubella HOM05D007210 ORTHO05D006152 2.0e-23 112.8 122 47.5
BcaC07g41054 Brassica carinata HOM05D007210 ORTHO05D006152 3.5e-23 112.1 119 46.2
BraA09t37003Z Brassica rapa HOM05D007210 ORTHO05D006152 7.8e-23 110.9 123 50.4
Carub.0002s0170 Capsella rubella HOM05D007210 ORTHO05D006152 7.8e-23 110.9 117 48.7
A09p13520 Brassica napus HOM05D007210 ORTHO05D006152 1.0e-22 110.5 123 50.4
BcaB01g02146 Brassica carinata HOM05D007210 ORTHO05D006152 5.0e-22 108.2 121 46.3
AT1G63205 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.1e-21 107.1 120 47.5
C03p93270 Brassica napus HOM05D007210 ORTHO05D006152 1.5e-21 106.7 119 47.1
BolC3t21625H Brassica oleracea HOM05D007210 ORTHO05D006152 1.5e-21 106.7 119 47.1
BolC5t29096H Brassica oleracea HOM05D007210 ORTHO05D006152 4.3e-21 105.1 120 45.8
BraA08t32080Z Brassica rapa HOM05D007210 ORTHO05D006152 4.3e-21 105.1 119 47.9
A08p00230 Brassica napus HOM05D007210 ORTHO05D006152 9.5e-21 104.0 118 47.5
BcaC02g10394 Brassica carinata HOM05D007210 ORTHO05D006152 2.1e-20 102.8 125 44.0
CARHR048270 Cardamine hirsuta HOM05D007210 ORTHO05D006152 3.6e-20 102.1 108 47.2
AL4G33850 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.4e-19 100.1 118 48.3
BcaC05g24442 Brassica carinata HOM05D007210 ORTHO05D006152 1.4e-19 100.1 119 43.7
BcaNung06875 Brassica carinata HOM05D007210 ORTHO05D006152 1.4e-19 100.1 117 48.7
C05p03140 Brassica napus HOM05D007210 ORTHO05D006152 2.3e-19 99.4 120 44.2
Carub.0002s0169 Capsella rubella HOM05D007210 ORTHO05D006152 8.9e-19 97.4 120 44.2
BraA03t10618Z Brassica rapa HOM05D007210 ORTHO05D006152 1.5e-18 96.7 117 44.4
BcaB01g04428 Brassica carinata HOM05D007210 ORTHO05D006152 2.0e-18 96.3 116 45.7
BcaC04g22476 Brassica carinata HOM05D007210 ORTHO05D006152 3.4e-18 95.5 121 42.1
BolC9t54788H Brassica oleracea HOM05D007210 ORTHO05D006152 3.4e-18 95.5 121 42.1
A03p13090 Brassica napus HOM05D007210 ORTHO05D006152 4.4e-18 95.1 116 44.0
A09p15630 Brassica napus HOM05D007210 ORTHO05D006152 4.4e-18 95.1 119 42.0
BraA09t37203Z Brassica rapa HOM05D007210 ORTHO05D006152 4.4e-18 95.1 119 42.0
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 7.5e-18 94.4 113 46.0
BraA10t42618Z Brassica rapa HOM05D007210 ORTHO05D006152 7.5e-18 94.4 124 43.5
BolC3t13970H Brassica oleracea HOM05D007210 ORTHO05D006152 9.8e-18 94.0 116 44.0
A10p03420 Brassica napus HOM05D007210 ORTHO05D006152 1.3e-17 93.6 125 43.2
BcaB07g31384 Brassica carinata HOM05D007210 ORTHO05D006152 1.7e-17 93.2 119 42.0
A03p13080 Brassica napus HOM05D007210 ORTHO05D006152 1.7e-17 93.2 116 44.0
BraA03t10619Z Brassica rapa HOM05D007210 ORTHO05D006152 1.7e-17 93.2 116 44.0
BolC3t13971H Brassica oleracea HOM05D007210 ORTHO05D006152 3.7e-17 92.0 117 42.7
AL2G12280 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.9e-17 91.7 96 52.1
CARHR048290 Cardamine hirsuta HOM05D007210 ORTHO05D006152 6.4e-17 91.3 117 43.6
BcaC01g06454 Brassica carinata HOM05D007210 ORTHO05D006152 8.3e-17 90.9 116 43.1
A09p15620 Brassica napus HOM05D007210 ORTHO05D006152 8.3e-17 90.9 121 41.3
C03p15300 Brassica napus HOM05D007210 ORTHO05D006152 8.3e-17 90.9 116 43.1
C04p12630 Brassica napus HOM05D007210 ORTHO05D006152 8.3e-17 90.9 120 40.8
BolC4t22912H Brassica oleracea HOM05D007210 ORTHO05D006152 8.3e-17 90.9 120 40.8
BraA09t37202Z Brassica rapa HOM05D007210 ORTHO05D006152 8.3e-17 90.9 121 41.3
BcaC01g06453 Brassica carinata HOM05D007210 ORTHO05D006152 1.1e-16 90.5 117 42.7
BcaNung05242 Brassica carinata HOM05D007210 ORTHO05D006152 1.1e-16 90.5 117 42.7
AT2G37435 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.9e-16 89.7 99 47.5
BcaB07g31387 Brassica carinata HOM05D007210 ORTHO05D006152 1.9e-16 89.7 116 39.7
CARHR270660 Cardamine hirsuta HOM05D007210 ORTHO05D006152 2.4e-16 89.4 118 39.0
Thhalv10023805m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 3.2e-16 89.0 84 57.1
BcaC01g06452 Brassica carinata HOM05D007210 ORTHO05D006152 7.0e-16 87.8 118 41.5
BcaNung05243 Brassica carinata HOM05D007210 ORTHO05D006152 1.2e-15 87.0 116 42.2
CARHR284440 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.6e-15 86.7 119 41.2
BcaC02g11660 Brassica carinata HOM05D007210 ORTHO05D006152 2.0e-15 86.3 120 40.8
Carub.0004s1936 Capsella rubella HOM05D007210 ORTHO05D006152 6.0e-15 84.7 97 45.4
AL2G12200 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.8e-15 84.3 75 53.3
Carub.0008s1740 Capsella rubella HOM05D007210 ORTHO05D006152 1.7e-14 83.2 131 35.9
C09p48590 Brassica napus HOM05D007210 ORTHO05D006152 2.3e-14 82.8 118 37.3
Carub.0004s1937 Capsella rubella HOM05D007210 ORTHO05D006152 2.3e-14 82.8 119 37.0
BcaB08g36043 Brassica carinata HOM05D007210 ORTHO05D006152 8.6e-14 80.9 118 41.5
CARHR048280 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.5e-13 80.1 85 48.2
AL5G33880 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 2.5e-13 79.3 112 36.6
BolC3t13972H Brassica oleracea HOM05D007210 ORTHO05D006152 2.5e-13 79.3 94 42.6
A10p14200 Brassica napus HOM05D007210 ORTHO05D006152 4.3e-13 78.6 118 38.1
BraA10t43513Z Brassica rapa HOM05D007210 ORTHO05D006152 4.3e-13 78.6 118 38.1
BraA10t43512Z Brassica rapa HOM05D007210 ORTHO05D006152 5.6e-13 78.2 127 36.2
A10p14190 Brassica napus HOM05D007210 ORTHO05D006152 9.5e-13 77.4 138 35.5
BraA10t43511Z Brassica rapa HOM05D007210 ORTHO05D006152 1.2e-12 77.0 118 40.7
AL8G32780 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.6e-12 76.6 119 36.1
BcaB07g31391 Brassica carinata HOM05D007210 ORTHO05D006152 1.6e-12 76.6 119 36.1
A10p14180 Brassica napus HOM05D007210 ORTHO05D006152 3.6e-12 75.5 118 39.0
Thhalv10024042m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 3.6e-12 75.5 83 50.6
Carub.0006s0398 Capsella rubella HOM05D008885 ORTHO05D006152 4.7e-12 75.1 116 35.3
AT5G05060 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 6.2e-12 74.7 116 38.8
AT5G05040 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 1.8e-11 73.2 116 37.9
BcaC04g20042 Brassica carinata HOM05D007210 ORTHO05D019922 3.1e-11 72.4 93 41.9
BolC9t57696H Brassica oleracea HOM05D007210 ORTHO05D006152 3.1e-11 72.4 93 41.9
THA.LOC104809659 Tarenaya hassleriana HOM05D007210 ORTHO05D006152 6.8e-11 71.2 117 35.9
C03p15310 Brassica napus HOM05D007210 ORTHO05D006152 1.5e-10 70.1 117 35.9
BolC8t51626H Brassica oleracea HOM05D007210 ORTHO05D006152 2.6e-10 69.3 68 48.5
BcaB08g36040 Brassica carinata HOM05D007210 ORTHO05D006152 3.4e-10 68.9 132 34.8
CARHR208050 Cardamine hirsuta HOM05D008885 ORTHO05D006152 1.3e-09 67.0 99 38.4
C05p13910 Brassica napus HOM05D007210 ORTHO05D006152 2.2e-09 66.2 115 33.9
BcaB05g21736 Brassica carinata HOM05D008885 ORTHO05D006152 3.7e-09 65.5 110 31.8
CARHR040800 Cardamine hirsuta HOM05D008885 ORTHO05D006152 8.3e-09 64.3 84 42.9
A07p12710 Brassica napus HOM05D008885 ORTHO05D006152 1.1e-08 63.9 115 35.7
C03p15280 Brassica napus HOM05D008242 ORTHO05D010974 1.1e-08 63.9 122 32.8
BcaB05g21731 Brassica carinata HOM05D008885 ORTHO05D006152 2.4e-08 62.8 113 31.9
BolC5t30124H Brassica oleracea HOM05D007210 ORTHO05D006152 2.4e-08 62.8 115 33.0
BraA02t04832Z Brassica rapa HOM05D008885 ORTHO05D006152 3.2e-08 62.4 112 33.0
BraA07t29049Z Brassica rapa HOM05D008885 ORTHO05D006152 4.1e-08 62.0 115 34.8
CARHR040780 Cardamine hirsuta HOM05D008885 ORTHO05D006152 4.1e-08 62.0 84 41.7
Dinv04048 Davidia involucrata HOM05D000041 ORTHO05D019419 1.2e-07 60.5 78 43.6
AL6G14830 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 2.1e-07 59.7 86 36.0
Hma1.2p1_0785F.1_g217500 Hydrangea macrophylla HOM05D008623 ORTHO05D007789 3.5e-07 58.9 115 38.3
CSS0009631 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 4.6e-07 58.5 75 45.3
CSS0027810 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 4.6e-07 58.5 75 45.3
AL7G39710 Arabidopsis lyrata HOM05D008242 ORTHO05D012602 6.0e-07 58.2 98 36.7
C09p18860 Brassica napus HOM05D007210 ORTHO05D006152 6.0e-07 58.2 65 44.6
CSS0001720 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 6.0e-07 58.2 79 38.0
Sp2g01340 Schrenkiella parvula HOM05D007210 ORTHO05D006152 6.0e-07 58.2 48 54.2
Carub.0006s0396 Capsella rubella HOM05D008885 ORTHO05D006152 7.8e-07 57.8 102 34.3
Dinv41634 Davidia involucrata HOM05D008623 ORTHO05D007789 7.8e-07 57.8 116 36.2
AL1G58370 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 1.3e-06 57.0 95 37.9
CSS0006926 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 2.3e-06 56.2 115 31.3
BcaC01g06451 Brassica carinata HOM05D007210 ORTHO05D006152 3.9e-06 55.5 70 42.9
Dinv01175 Davidia involucrata HOM05D008623 ORTHO05D007789 3.9e-06 55.5 116 35.3
Dinv41577 Davidia involucrata HOM05D008623 ORTHO05D007789 5.1e-06 55.1 78 39.7
CSS0019356 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 6.6e-06 54.7 79 35.4
CSS0039646 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 8.6e-06 54.3 79 35.4


User provided reference genes

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