Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 4.1e-217 757.7 361 100.0
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 1.1e-190 669.8 345 90.4
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 1.3e-189 666.4 346 89.9
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 2.4e-188 662.1 345 89.3
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 5.3e-188 661.0 345 90.7
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 3.8e-186 654.8 345 87.5
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 3.5e-184 648.3 346 88.2
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 3.1e-180 635.2 346 86.7
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 1.7e-178 629.4 345 84.9
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 5.1e-175 617.8 345 83.8
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 5.1e-175 617.8 345 82.6
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 9.0e-172 607.1 328 86.3
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 1.6e-165 586.3 302 89.7
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 2.4e-148 529.3 344 72.7
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 6.1e-136 488.0 325 68.9
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 3.0e-135 485.7 346 66.2
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 5.2e-135 485.0 348 66.4
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 2.6e-134 482.6 328 69.8
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 2.6e-134 482.6 339 67.3
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 4.4e-134 481.9 326 69.0
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.3e-133 480.3 324 69.1
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 1.3e-133 480.3 324 69.1
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 2.8e-133 479.2 356 63.8
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 2.8e-133 479.2 357 64.7
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 1.4e-132 476.9 324 68.2
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 3.1e-132 475.7 327 68.2
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 7.0e-132 474.6 355 65.6
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 7.0e-132 474.6 335 66.6
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 1.2e-131 473.8 346 65.0
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 2.7e-131 472.6 348 62.4
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 3.5e-131 472.2 347 63.7
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 5.9e-131 471.5 347 62.0
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.0e-130 470.7 346 64.7
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 2.9e-130 469.2 332 67.2
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 3.8e-130 468.8 333 67.3
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 1.1e-129 467.2 349 62.8
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 3.2e-129 465.7 358 61.7
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 4.2e-129 465.3 324 68.2
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 5.5e-129 464.9 324 67.6
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 5.5e-129 464.9 348 63.5
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 7.2e-129 464.5 326 64.7
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 7.2e-129 464.5 331 64.4
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 7.2e-129 464.5 323 66.9
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 1.2e-128 463.8 332 66.0
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 3.6e-128 462.2 323 65.3
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 3.6e-128 462.2 358 62.3
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 1.4e-127 460.3 351 62.7
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 1.4e-127 460.3 351 62.7
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 3.0e-127 459.1 335 65.1
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 3.0e-127 459.1 358 61.7
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 8.8e-127 457.6 360 61.7
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 1.2e-126 457.2 327 66.1
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 7.5e-126 454.5 353 62.3
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 9.8e-126 454.1 326 64.4
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 3.7e-125 452.2 329 65.0
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 4.9e-125 451.8 351 61.3
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 4.9e-125 451.8 384 58.6
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 8.3e-125 451.1 327 64.5
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 1.8e-124 449.9 384 58.3
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 5.4e-124 448.4 333 64.9
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 1.2e-123 447.2 319 63.6
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 3.5e-123 445.7 353 58.9
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 5.9e-123 444.9 355 60.6
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 7.7e-123 444.5 348 61.8
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 1.3e-122 443.7 349 61.0
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 1.7e-122 443.4 328 63.1
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 3.8e-122 442.2 337 62.0
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 2.5e-121 439.5 362 60.8
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 3.3e-121 439.1 323 62.2
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 3.3e-121 439.1 355 60.3
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 3.3e-121 439.1 342 61.7
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 8.0e-120 434.5 360 58.3
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 1.0e-119 434.1 355 59.4
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 1.4e-119 433.7 363 58.4
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 1.8e-119 433.3 403 55.6
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 7.0e-116 421.4 323 62.2
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 7.0e-116 421.4 323 62.2
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 2.0e-115 419.9 308 64.9
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 6.4e-109 398.3 350 55.7
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 1.1e-108 397.5 282 66.7
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 1.4e-108 397.1 330 56.1
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 2.7e-107 392.9 359 54.9
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 7.8e-107 391.3 338 56.8
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 1.0e-106 391.0 279 63.4
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 7.3e-105 384.8 281 63.0
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 4.7e-104 382.1 277 63.9
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 4.0e-103 379.0 338 54.1
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 6.8e-103 378.3 281 64.4
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 7.5e-102 374.8 283 62.5
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 1.3e-101 374.0 363 54.3
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 1.2e-94 350.9 272 69.5
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 5.8e-94 348.6 283 60.4
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 9.2e-92 341.3 272 61.8
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 2.4e-84 316.6 248 60.1
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 1.7e-61 240.7 277 46.2
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 3.9e-58 229.6 156 65.4
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 4.8e-56 222.6 145 66.2
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 4.5e-54 216.1 186 58.6
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 3.9e-50 203.0 346 37.6
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 3.7e-48 196.4 121 69.4
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 3.4e-46 189.9 118 70.3
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 7.9e-43 178.7 302 36.8
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 2.9e-37 160.2 331 35.3
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 1.9e-36 157.5 123 62.6
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 3.9e-34 149.8 488 25.0
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 4.2e-28 129.8 109 59.6
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 5.7e-17 92.8 76 56.6
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 1.8e-15 87.8 64 62.5
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 9.1e-15 85.5 110 39.1
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 5.9e-14 82.8 45 77.8
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 7.7e-14 82.4 51 72.5
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 8.6e-13 79.0 277 26.0
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 2.8e-11 73.9 188 33.0
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 8.0e-11 72.4 86 46.5
Potri.001G016200 Populus trichocarpa HOM05D004419 ORTHO05D005480 8.0e-11 72.4 301 23.6
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 1.0e-10 72.0 279 24.0
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 1.8e-10 71.2 275 25.1
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 3.0e-10 70.5 280 25.4
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 4.0e-10 70.1 274 23.4
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 4.0e-10 70.1 275 22.9
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 4.0e-10 70.1 291 23.0
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 1.5e-09 68.2 304 22.7
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 2.0e-09 67.8 325 24.0
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 2.0e-09 67.8 299 24.4
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 2.0e-09 67.8 301 22.6
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 2.0e-09 67.8 325 22.8
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 2.6e-09 67.4 297 24.6
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 3.4e-09 67.0 277 24.2
AagrBONN_evm.TU.Sc2ySwM_117.3437 Anthoceros agrestis HOM05D004419 ORTHO05D005480 4.4e-09 66.6 302 21.5
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 5.7e-09 66.2 296 25.0
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 5.7e-09 66.2 275 24.7
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 5.7e-09 66.2 296 25.0
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 5.7e-09 66.2 296 25.0
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 5.7e-09 66.2 275 25.1
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 5.7e-09 66.2 323 23.2
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 5.7e-09 66.2 93 40.9
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 7.5e-09 65.9 274 23.4
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 7.5e-09 65.9 275 23.6
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 9.8e-09 65.5 274 23.0
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 1.3e-08 65.1 291 23.4
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 1.3e-08 65.1 275 22.9
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 1.7e-08 64.7 274 22.6
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 1.7e-08 64.7 275 23.3
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 1.7e-08 64.7 275 23.3
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 1.7e-08 64.7 275 20.7
Medtr4g066020 Medicago truncatula HOM05D004419 ORTHO05D005480 1.7e-08 64.7 304 24.0
RcHm_v2.0_Chr5g0078171 Rosa chinensis HOM05D004419 ORTHO05D005480 2.2e-08 64.3 274 21.5
QL01p006124 Quercus lobata HOM05D004419 ORTHO05D005480 2.8e-08 63.9 276 23.6
Manes.06G168600 Manihot esculenta HOM05D004419 ORTHO05D005480 3.7e-08 63.5 197 26.4
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 3.7e-08 63.5 285 22.5
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 4.9e-08 63.2 275 23.3
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 4.9e-08 63.2 304 24.0
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 4.9e-08 63.2 276 23.2
Cpa.g.sc84.102 Carica papaya HOM05D004419 ORTHO05D005480 6.3e-08 62.8 277 23.1
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 8.3e-08 62.4 305 23.3
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 1.1e-07 62.0 275 22.2
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 1.4e-07 61.6 281 23.5
Lalb_Chr01g0003291 Lupinus albus HOM05D004419 ORTHO05D005480 1.4e-07 61.6 288 24.3
Glyma.11G130600 Glycine max HOM05D004419 ORTHO05D005480 1.8e-07 61.2 302 22.5
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 3.1e-07 60.5 279 24.0
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 4.1e-07 60.1 298 21.1
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 4.1e-07 60.1 275 21.5
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 4.1e-07 60.1 274 21.5
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 4.1e-07 60.1 290 21.4
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 5.4e-07 59.7 177 26.6
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 5.4e-07 59.7 72 47.2
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 7.0e-07 59.3 296 20.6
FAN25G0488 Fragaria x ananassa HOM05D004419 ORTHO05D005480 7.0e-07 59.3 288 19.4
Phvul.011G056900 Phaseolus vulgaris HOM05D004419 ORTHO05D005480 7.0e-07 59.3 291 23.0
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 9.2e-07 58.9 291 23.0
FAN16G1269 Fragaria x ananassa HOM05D004419 ORTHO05D005480 2.7e-06 57.4 177 22.6
Psat7g213880 Pisum sativum HOM05D004419 ORTHO05D005480 2.7e-06 57.4 194 25.8


User provided reference genes

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