Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 2.0e-64 249.2 148 100.0
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 3.5e-61 238.4 148 95.9
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 3.5e-61 238.4 148 95.9
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 3.5e-61 238.4 148 95.9
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 1.3e-60 236.5 148 95.3
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.3e-60 236.5 148 95.3
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.3e-60 236.5 148 95.3
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 1.3e-60 236.5 148 95.3
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 1.2e-58 229.9 148 91.9
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.0e-57 226.9 148 92.6
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 3.0e-57 225.3 148 82.4
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 3.0e-57 225.3 148 91.2
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 5.2e-57 224.6 148 82.4
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 1.6e-45 186.4 148 78.4
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 4.5e-37 158.3 148 60.8
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 2.3e-36 156.0 148 59.5
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.0e-36 154.8 148 58.8
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 6.6e-36 154.5 148 59.5
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 8.6e-36 154.1 148 59.5
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.1e-35 153.7 148 58.1
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.9e-35 152.9 148 58.1
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.9e-35 152.9 148 58.1
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 2.5e-35 152.5 148 58.8
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 4.3e-35 151.8 148 58.8
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 5.6e-35 151.4 148 57.4
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 9.5e-35 150.6 148 57.4
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 2.1e-34 149.4 148 56.8
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 2.8e-34 149.1 147 57.1
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 3.6e-34 148.7 148 58.1
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 4.7e-34 148.3 148 56.1
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.7e-34 148.3 148 64.9
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 6.1e-34 147.9 148 56.1
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 8.0e-34 147.5 148 56.1
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 8.0e-34 147.5 148 56.8
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.4e-33 146.7 148 56.1
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.8e-33 146.4 148 56.1
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.8e-33 146.4 148 54.1
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 6.8e-33 144.4 143 55.2
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 6.8e-33 144.4 148 55.4
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 8.9e-33 144.1 150 59.3
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 53.4
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 54.7
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 54.7
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 2.0e-32 142.9 148 55.4
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 4.4e-32 141.7 148 55.4
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 4.4e-32 141.7 142 56.3
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 7.5e-32 141.0 148 54.1
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.3e-31 140.2 148 53.4
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 6.4e-31 137.9 144 54.2
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.4e-30 136.0 148 54.1
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.4e-30 136.0 144 53.5
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 3.2e-30 135.6 145 51.0
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 5.4e-30 134.8 150 53.3
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 7.0e-30 134.4 148 54.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 9.2e-30 134.0 148 54.1
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 9.2e-30 134.0 143 53.8
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 2.0e-29 132.9 150 55.3
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.6e-29 131.7 148 48.6
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.6e-29 131.7 143 52.4
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 6.0e-29 131.3 144 54.9
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 7.8e-29 131.0 150 54.0
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 5.0e-28 128.3 152 53.3
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 6.6e-28 127.9 151 53.0
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 8.6e-28 127.5 150 50.0
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.1e-27 127.1 148 50.7
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.9e-27 126.3 143 51.7
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 2.5e-27 125.9 148 52.0
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 3.3e-27 125.6 152 48.7
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 7.3e-27 124.4 148 50.0
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 9.5e-27 124.0 152 52.6
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 9.5e-27 124.0 151 51.7
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 9.5e-27 124.0 142 53.5
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.6e-26 123.2 119 58.0
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.1e-26 122.9 150 49.3
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 2.8e-26 122.5 151 51.0
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 3.6e-26 122.1 150 52.0
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 8.0e-26 120.9 150 50.7
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.1e-25 120.6 140 47.9
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 3.1e-25 119.0 119 56.3
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.0e-25 118.6 150 50.0
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 8.9e-25 117.5 141 52.5
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 8.9e-25 117.5 155 50.3
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 2.6e-24 115.9 132 54.5
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.4e-24 115.5 150 50.7
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.4e-24 115.5 150 50.7
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.8e-24 114.8 149 48.3
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 9.8e-24 114.0 123 50.4
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.3e-23 113.6 149 48.3
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.3e-23 113.6 149 48.3
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 2.2e-23 112.8 149 49.0
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 2.9e-23 112.5 148 46.6
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 8.3e-23 110.9 137 47.4
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.4e-22 110.2 148 49.3
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 3.2e-22 109.0 148 44.6
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.2e-22 109.0 129 49.6
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 9.2e-22 107.5 120 53.3
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 1.2e-21 107.1 119 52.9
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.7e-21 105.9 119 52.9
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.7e-21 105.9 119 52.9
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.5e-21 105.5 148 44.6
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.1e-20 101.7 135 46.7
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.1e-20 101.7 118 49.2
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 1.5e-19 100.1 112 51.8
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 2.5e-19 99.4 151 41.1
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 5.6e-19 98.2 119 47.9
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 7.3e-19 97.8 111 52.3
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.2e-18 97.1 136 40.4
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.6e-18 96.7 114 50.9
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 1.6e-18 96.7 121 49.6
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 3.6e-18 95.5 149 45.0
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.7e-18 95.1 151 43.0
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 6.2e-18 94.7 149 45.6
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.1e-17 94.0 114 50.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 8.9e-17 90.9 125 43.2
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 8.3e-15 84.3 148 41.2
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-13 80.5 79 55.7
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 2.7e-13 79.3 148 36.5
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.0e-12 77.4 84 53.6
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 4.3e-11 72.0 75 53.3
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 2.1e-10 69.7 60 63.3
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 8.9e-09 64.3 119 36.1
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-08 63.2 95 41.1
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 5.8e-08 61.6 88 43.2
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.9e-07 59.3 95 38.9


User provided reference genes

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