Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g03750 Schrenkiella parvula HOM05D000882 ORTHO05D001142 2.9e-99 365.2 177 100.0
AL3G30610 Arabidopsis lyrata HOM05D000882 ORTHO05D001142 4.5e-23 112.1 111 55.9
Carub.0003s1944 Capsella rubella HOM05D000882 ORTHO05D001142 4.9e-22 108.6 109 55.0
AT3G17550 Arabidopsis thaliana HOM05D000882 ORTHO05D001142 1.9e-21 106.7 127 48.8
Thhalv10022155m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 4.2e-21 105.5 116 51.7
AT3G19595 Arabidopsis thaliana HOM05D000882 ORTHO05D001142 1.6e-20 103.6 95 56.8
AT3G19600 Arabidopsis thaliana HOM05D000882 ORTHO05D001142 1.6e-20 103.6 95 56.8
AL1G33150 Arabidopsis lyrata HOM05D000882 ORTHO05D001142 1.9e-18 96.7 127 45.7
Thhalv10021915m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 3.3e-18 95.9 122 44.3
AT1G20320 Arabidopsis thaliana HOM05D000882 ORTHO05D001142 4.3e-18 95.5 111 48.6
CARHR092870 Cardamine hirsuta HOM05D000882 ORTHO05D001142 1.3e-17 94.0 111 48.6
Thhalv10019698m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 2.1e-17 93.2 92 55.4
Carub.0003s1725 Capsella rubella HOM05D000882 ORTHO05D001142 2.8e-17 92.8 119 45.4
Thhalv10014191m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 3.7e-17 92.4 115 45.2
Thhalv10022510m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 3.7e-17 92.4 115 45.2
AT2G04930 Arabidopsis thaliana HOM05D000882 ORTHO05D001142 4.8e-17 92.0 93 53.8
Carub.0003s1946 Capsella rubella HOM05D000882 ORTHO05D001142 4.8e-17 92.0 111 51.4
CARHR095050 Cardamine hirsuta HOM05D000882 ORTHO05D001142 4.8e-17 92.0 114 48.2
BcaB04g19051 Brassica carinata HOM05D000882 ORTHO05D001142 6.2e-17 91.7 92 51.1
BolC3t17337H Brassica oleracea HOM05D000882 ORTHO05D001142 6.2e-17 91.7 88 52.3
BcaC05g28509 Brassica carinata HOM05D000882 ORTHO05D001142 8.2e-17 91.3 91 53.8
C05p45930 Brassica napus HOM05D000882 ORTHO05D001142 8.2e-17 91.3 91 53.8
BolC5t33312H Brassica oleracea HOM05D000882 ORTHO05D001142 8.2e-17 91.3 91 53.8
BcaB04g20691 Brassica carinata HOM05D000882 ORTHO05D001142 1.8e-16 90.1 88 51.1
BraA03t13285Z Brassica rapa HOM05D000882 ORTHO05D001142 2.4e-16 89.7 88 51.1
Thhalv10015557m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 2.4e-16 89.7 115 44.3
THA.LOC104818139 Tarenaya hassleriana HOM05D000882 ORTHO05D001142 2.4e-16 89.7 119 44.5
AL3G42690 Arabidopsis lyrata HOM05D000882 ORTHO05D001142 4.1e-16 89.0 90 55.6
Sp6g11720 Schrenkiella parvula HOM05D000882 ORTHO05D001142 5.3e-16 88.6 134 39.6
C03p50450 Brassica napus HOM05D000882 ORTHO05D001142 6.9e-16 88.2 88 50.0
Sp6g16160 Schrenkiella parvula HOM05D000882 ORTHO05D001142 1.2e-15 87.4 115 47.0
Carub.0001s1982 Capsella rubella HOM05D000882 ORTHO05D001142 2.0e-15 86.7 97 51.5
BcaB06g25982 Brassica carinata HOM05D000882 ORTHO05D001142 3.4e-15 85.9 91 51.6
Sp3g17640 Schrenkiella parvula HOM05D000882 ORTHO05D001142 3.4e-15 85.9 99 49.5
BraA01t03590Z Brassica rapa HOM05D000882 ORTHO05D001142 7.6e-15 84.7 100 46.0
A05p30350 Brassica napus HOM05D000882 ORTHO05D001142 3.8e-14 82.4 90 50.0
BraA05t21873Z Brassica rapa HOM05D000882 ORTHO05D001142 3.8e-14 82.4 90 50.0
BcaB06g26030 Brassica carinata HOM05D000882 ORTHO05D001142 6.5e-14 81.6 114 41.2
BcaC09g48925 Brassica carinata HOM05D000882 ORTHO05D001142 1.4e-13 80.5 100 44.0
C01p44510 Brassica napus HOM05D000882 ORTHO05D001142 1.4e-13 80.5 100 44.0
BolC1t04417H Brassica oleracea HOM05D000882 ORTHO05D001142 1.4e-13 80.5 100 44.0
BcaC01g03618 Brassica carinata HOM05D000882 ORTHO05D001142 3.2e-13 79.3 87 49.4
AL6G34750 Arabidopsis lyrata HOM05D000882 ORTHO05D001142 1.2e-12 77.4 132 34.8
AL8G29440 Arabidopsis lyrata HOM05D000882 ORTHO05D001142 1.2e-12 77.4 115 40.0
CARHR151240 Cardamine hirsuta HOM05D000882 ORTHO05D001142 3.5e-12 75.9 86 52.3
Carub.0003s1497 Capsella rubella HOM05D000882 ORTHO05D001142 6.1e-12 75.1 87 46.0
Thhalv10023181m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 6.1e-12 75.1 113 39.8
Aa31LG11G2880 Aethionema arabicum HOM05D000882 ORTHO05D001142 1.0e-11 74.3 101 41.6
AT2G02290 Arabidopsis thaliana HOM05D000882 ORTHO05D001142 1.8e-11 73.6 132 36.4
Thhalv10022381m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 1.8e-11 73.6 115 37.4
Aa31LG8G2490 Aethionema arabicum HOM05D000882 ORTHO05D001142 2.3e-11 73.2 102 40.2
AT5G54210 Arabidopsis thaliana HOM05D000882 ORTHO05D001142 3.0e-11 72.8 115 39.1
BcaC05g28444 Brassica carinata HOM05D000882 ORTHO05D001142 3.0e-11 72.8 92 45.7
C05p45290 Brassica napus HOM05D000882 ORTHO05D001142 3.0e-11 72.8 92 45.7
A05p30020 Brassica napus HOM05D000882 ORTHO05D001142 3.9e-11 72.4 92 45.7
BraA05t21844Z Brassica rapa HOM05D000882 ORTHO05D001142 3.9e-11 72.4 92 45.7
BcaB04g19052 Brassica carinata HOM05D000882 ORTHO05D001142 5.1e-11 72.0 107 43.9
BcaC01g03616 Brassica carinata HOM05D000882 ORTHO05D001142 5.1e-11 72.0 104 46.2
C03p50470 Brassica napus HOM05D000882 ORTHO05D001142 5.1e-11 72.0 104 44.2
BcaB06g26028 Brassica carinata HOM05D000882 ORTHO05D001142 8.7e-11 71.2 106 40.6
AT5G23470 Arabidopsis thaliana HOM05D000882 ORTHO05D001142 4.3e-10 68.9 119 36.1
Thhalv10000277m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 4.3e-10 68.9 94 40.4
AL3G27730 Arabidopsis lyrata HOM05D000882 ORTHO05D001142 5.7e-10 68.6 112 38.4
CARHR090290 Cardamine hirsuta HOM05D000882 ORTHO05D001142 7.4e-10 68.2 87 43.7
CARHR190050 Cardamine hirsuta HOM05D000882 ORTHO05D001142 1.6e-09 67.0 118 38.1
THA.LOC104820857 Tarenaya hassleriana HOM05D000882 ORTHO05D001142 1.4e-08 63.9 96 39.6
THA.LOC109116849 Tarenaya hassleriana HOM05D000882 ORTHO05D001142 1.8e-08 63.5 87 41.4
Aa31LG8G6530 Aethionema arabicum HOM05D000882 ORTHO05D001142 2.4e-08 63.2 111 34.2
Atru.chr7.1469 Acer truncatum HOM05D000882 ORTHO05D001142 1.2e-07 60.8 144 32.6
Carub.0003s1945 Capsella rubella HOM05D000882 ORTHO05D001142 2.0e-07 60.1 47 57.4
BolC1t04886H Brassica oleracea HOM05D000882 ORTHO05D001142 1.3e-06 57.4 78 43.6
CARHR179180 Cardamine hirsuta HOM05D000882 ORTHO05D001142 1.3e-06 57.4 120 35.0
Atru.chr1.3494 Acer truncatum HOM05D000882 ORTHO05D001142 2.9e-06 56.2 123 34.1
Atru.chr1.3488 Acer truncatum HOM05D000882 ORTHO05D001142 3.8e-06 55.8 123 33.3
BcaC09g48487 Brassica carinata HOM05D000882 ORTHO05D001142 3.8e-06 55.8 78 43.6
C01p49270 Brassica napus HOM05D000882 ORTHO05D001142 3.8e-06 55.8 78 43.6
BcaC01g04733 Brassica carinata HOM05D000882 ORTHO05D001142 6.5e-06 55.1 93 41.9
A03p41310 Brassica napus HOM05D000882 ORTHO05D001142 6.5e-06 55.1 55 52.7


User provided reference genes

Program Settings