Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 4.5e-234 814.3 441 100.0
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 7.3e-208 727.2 447 88.6
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 1.9e-200 702.6 496 79.6
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 1.8e-198 696.0 445 85.8
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 2.9e-196 688.7 454 83.9
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 5.4e-195 684.5 454 83.0
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 5.4e-195 684.5 454 83.0
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 6.0e-194 681.0 441 83.7
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 4.2e-187 658.3 441 81.9
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 1.2e-186 656.8 463 79.0
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 1.0e-185 653.7 438 80.6
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 1.5e-181 639.8 438 78.1
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 4.8e-175 618.2 425 79.3
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 6.1e-154 548.1 441 66.9
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 3.8e-148 528.9 460 66.5
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 1.0e-132 477.6 438 59.6
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 1.5e-128 463.8 438 57.3
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 2.9e-124 449.5 437 57.7
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 5.0e-124 448.7 438 56.2
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 8.6e-124 448.0 438 55.5
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 5.5e-123 445.3 439 58.5
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.6e-122 443.7 437 56.5
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 4.7e-122 442.2 437 55.8
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 6.8e-121 438.3 439 55.6
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.2e-117 427.6 426 56.3
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 1.6e-117 427.2 307 78.5
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 3.9e-116 422.5 438 55.0
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 6.6e-116 421.8 428 54.0
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.6e-115 418.7 438 54.1
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 1.0e-113 414.5 437 51.9
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 1.4e-113 414.1 438 52.7
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 2.3e-113 413.3 419 54.7
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 1.2e-112 411.0 438 51.1
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 9.8e-112 407.9 435 50.8
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.3e-111 407.5 437 51.0
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.1e-110 404.4 438 53.7
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 2.4e-110 403.3 433 52.2
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 3.0e-108 396.4 376 56.6
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.6e-106 390.6 473 47.6
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 3.6e-106 389.4 543 44.0
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 4.7e-106 389.0 438 48.9
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 6.2e-106 388.7 373 55.8
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 2.6e-104 383.3 391 54.5
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.2e-103 380.2 437 49.2
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 2.9e-103 379.8 437 48.1
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 4.9e-103 379.0 430 51.2
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 1.9e-102 377.1 429 51.7
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 3.2e-102 376.3 437 49.0
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 1.6e-101 374.0 437 49.7
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 6.0e-101 372.1 439 48.1
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.0e-100 371.3 592 41.9
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 3.3e-99 366.3 437 47.6
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 5.6e-99 365.5 437 49.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.1e-98 363.6 433 50.8
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.8e-98 363.2 438 49.3
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 6.2e-98 362.1 428 48.1
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.1e-97 361.3 439 47.2
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 1.5e-96 357.5 429 48.3
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 2.0e-96 357.1 439 48.3
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.0e-96 357.1 415 50.8
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.1e-94 351.3 436 45.0
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 1.4e-94 350.9 303 63.0
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 1.9e-94 350.5 438 44.5
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 2.4e-94 350.1 439 50.1
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.4e-94 350.1 425 47.3
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 5.4e-94 349.0 434 48.2
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.2e-94 348.2 323 59.4
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 9.2e-94 348.2 438 47.0
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.2e-93 347.8 425 47.3
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.2e-93 347.8 439 48.7
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 1.6e-93 347.4 436 45.2
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 4.6e-93 345.9 437 45.3
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 4.6e-93 345.9 437 45.8
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 7.8e-93 345.1 438 44.5
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 7.8e-93 345.1 456 45.0
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 1.7e-92 344.0 432 47.5
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.7e-92 344.0 434 44.0
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.7e-92 344.0 438 47.5
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 1.9e-91 340.5 369 50.9
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 2.1e-90 337.0 438 46.1
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.6e-88 330.1 464 43.1
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 2.6e-88 330.1 438 46.8
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 7.6e-88 328.6 459 42.7
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 2.2e-87 327.0 435 44.8
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.9e-87 326.6 415 47.7
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 1.4e-86 324.3 438 45.0
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 5.4e-86 322.4 439 44.2
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 3.5e-85 319.7 438 45.2
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 3.0e-84 316.6 446 46.0
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 4.3e-83 312.8 206 79.1
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 4.3e-83 312.8 438 43.2
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.3e-82 311.2 434 42.9
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 1.6e-82 310.8 431 44.1
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 9.0e-81 305.1 439 43.1
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 2.0e-80 303.9 350 49.7
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 2.6e-80 303.5 437 41.0
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 4.4e-80 302.8 430 43.5
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 2.2e-79 300.4 435 43.0
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 2.2e-79 300.4 441 43.1
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.4e-79 298.9 437 40.7
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 3.2e-78 296.6 439 41.9
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 7.1e-78 295.4 434 41.2
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 2.1e-77 293.9 445 43.4
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 3.5e-77 293.1 380 45.8
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 4.3e-75 286.2 433 40.9
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 2.1e-74 283.9 398 43.5
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 1.2e-72 278.1 357 43.4
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 2.6e-72 276.9 444 38.7
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 7.1e-70 268.9 325 48.0
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 5.6e-67 259.2 248 54.8
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 2.8e-66 256.9 420 41.9
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 4.8e-66 256.1 203 74.9
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 2.4e-65 253.8 391 40.2
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 4.0e-65 253.1 287 50.2
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.5e-59 234.6 441 34.9
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 2.4e-57 227.3 350 41.1
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 9.0e-57 225.3 460 35.4
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 3.8e-55 219.9 205 56.1
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 4.2e-54 216.5 221 52.0
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.7e-53 213.8 441 32.9
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 7.9e-53 212.2 610 28.4
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 3.9e-52 209.9 439 36.0
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 7.4e-51 205.7 231 48.9
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 3.1e-49 200.3 303 42.2
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 1.0e-44 185.3 220 51.8
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.3e-43 180.3 413 32.9
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 5.0e-39 166.4 336 35.4
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 5.1e-36 156.4 204 40.7
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 7.4e-35 152.5 214 47.7
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 8.2e-34 149.1 170 52.4
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 5.0e-31 139.8 430 28.1
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 1.1e-27 128.6 410 25.6
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 4.8e-26 123.2 158 43.7
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.1e-25 120.6 425 26.8
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 2.9e-23 114.0 358 28.2
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 1.2e-21 108.6 250 30.0
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 1.2e-21 108.6 97 53.6
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 2.8e-18 97.4 149 43.6
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.5e-16 90.5 100 46.0
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 3.5e-16 90.5 184 33.7
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 1.0e-15 89.0 107 50.5
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 1.0e-15 89.0 82 59.8
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 6.5e-15 86.3 74 60.8
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.5e-14 85.1 73 52.1
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.6e-13 80.5 440 27.0
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 3.6e-13 80.5 136 41.9
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 7.5e-11 72.8 94 47.9
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 1.7e-10 71.6 66 60.6
AL5G11880 Arabidopsis lyrata HOM05D000513 ORTHO05D005419 7.0e-09 66.2 105 50.5
COL.COLO4_15711 Corchorus olitorius HOM05D004546 ORTHO05D005419 4.5e-08 63.5 68 52.9
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 3.3e-06 57.4 77 36.4


User provided reference genes

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