Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g03170 Schrenkiella parvula HOM05D007484 ORTHO05D008290 7.5e-261 903.3 445 100.0
BolC1t03792H Brassica oleracea HOM05D007484 ORTHO05D008290 1.1e-158 563.9 453 62.7
BraA01t03152Z Brassica rapa HOM05D007484 ORTHO05D008290 3.5e-157 558.9 453 62.3
C01p38280 Brassica napus HOM05D007484 ORTHO05D008290 4.5e-157 558.5 453 62.3
A01p30140 Brassica napus HOM05D007484 ORTHO05D008290 2.5e-155 552.7 453 61.4
BolC1t03787H Brassica oleracea HOM05D007484 ORTHO05D008290 4.7e-154 548.5 453 61.4
C06p16440 Brassica napus HOM05D007484 ORTHO05D008290 3.4e-152 542.3 453 60.9
BolC6t36847H Brassica oleracea HOM05D007484 ORTHO05D008290 3.4e-152 542.3 453 60.9
BcaC08g44240 Brassica carinata HOM05D007484 ORTHO05D008290 5.9e-149 531.6 453 60.5
Thhalv10024022m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.8e-145 520.0 436 60.8
Thhalv10023802m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 7.3e-139 498.0 422 60.7
Thhalv10023885m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.9e-134 483.4 421 58.9
Thhalv10024043m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 2.1e-133 479.9 420 59.8
AL2G15010 Arabidopsis lyrata HOM05D007484 ORTHO05D008290 1.0e-132 477.6 447 55.5
AL2G15000 Arabidopsis lyrata HOM05D007484 ORTHO05D008290 5.1e-132 475.3 448 55.8
Thhalv10023878m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 5.1e-132 475.3 422 59.0
Thhalv10024036m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.8e-129 466.8 436 56.9
BcaC08g44241 Brassica carinata HOM05D007484 ORTHO05D008290 3.4e-128 462.6 465 53.3
Thhalv10023845m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.7e-127 460.3 421 57.2
Carub.0002s1064 Capsella rubella HOM05D007484 ORTHO05D008290 4.6e-125 452.2 446 53.6
AT1G61320 Arabidopsis thaliana HOM05D007484 ORTHO05D008290 1.5e-123 447.2 447 52.3
AT1G61330 Arabidopsis thaliana HOM05D007484 ORTHO05D008290 2.1e-122 443.4 449 51.7
Carub.0002s1104 Capsella rubella HOM05D007484 ORTHO05D008290 2.1e-122 443.4 447 51.7
Carub.0002s1106 Capsella rubella HOM05D007484 ORTHO05D008290 2.2e-119 433.3 447 50.3
Carub.0005s0816 Capsella rubella HOM05D007484 ORTHO05D008290 6.4e-119 431.8 447 51.5
Sp2g04890 Schrenkiella parvula HOM05D007484 ORTHO05D008290 3.5e-117 426.0 400 54.8
C06p16450 Brassica napus HOM05D007484 ORTHO05D008290 8.1e-114 414.8 316 63.6
BolC6t36848H Brassica oleracea HOM05D007484 ORTHO05D008290 8.1e-114 414.8 316 63.6
A01p30150 Brassica napus HOM05D007484 ORTHO05D008290 5.8e-112 408.7 311 64.3
Thhalv10023947m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 2.5e-107 393.3 397 53.9
CARHR051310 Cardamine hirsuta HOM05D007484 ORTHO05D008290 3.4e-96 356.3 351 53.3
BcaB04g20332 Brassica carinata HOM05D007484 ORTHO05D008290 4.6e-93 345.9 329 56.2
Thhalv10024091m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 3.0e-92 343.2 289 59.5
C01p38250 Brassica napus HOM05D007484 ORTHO05D008290 1.9e-91 340.5 453 44.6
Thhalv10023839m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.1e-86 324.7 294 59.9
Sp2g04880 Schrenkiella parvula HOM05D007484 ORTHO05D008290 7.1e-86 322.0 419 44.9
THA.LOC104809547 Tarenaya hassleriana HOM05D007484 ORTHO05D008290 1.1e-78 298.1 405 38.5
Carub.0002s1107 Capsella rubella HOM05D007484 ORTHO05D008290 3.0e-76 290.0 294 51.7
Aa31LG2G9340 Aethionema arabicum HOM05D007484 ORTHO05D008290 1.3e-74 284.6 427 39.6
BraA01t03151Z Brassica rapa HOM05D007484 ORTHO05D008290 5.3e-73 279.3 219 62.1
Sabra11G0029500 Salix brachista HOM05D007484 ORTHO05D008290 1.8e-68 264.2 417 38.4
Dinv40482 Davidia involucrata HOM05D007484 ORTHO05D008290 6.7e-68 262.3 405 36.3
Cfa000354 Carpinus fangiana HOM05D007484 ORTHO05D008290 1.5e-67 261.2 435 35.4
Haze_06572 Corylus avellana HOM05D007484 ORTHO05D008290 4.1e-65 253.1 407 36.4
Potri.011G042900 Populus trichocarpa HOM05D007484 ORTHO05D008290 1.2e-64 251.5 415 37.6
QL04p018320 Quercus lobata HOM05D007484 ORTHO05D008290 5.5e-62 242.7 416 35.3
Eucgr.D00711 Eucalyptus grandis HOM05D007484 ORTHO05D008290 6.7e-60 235.7 411 34.8
CARHR053380 Cardamine hirsuta HOM05D007484 ORTHO05D008290 2.0e-59 234.2 207 60.9
TAR626G0438 Trochodendron aralioides HOM05D007484 ORTHO05D008290 1.4e-57 228.0 427 34.0
Lalb_Chr20g0122271 Lupinus albus HOM05D007484 ORTHO05D008290 1.7e-55 221.1 416 33.2
Potri.004G034500 Populus trichocarpa HOM05D007484 ORTHO05D008290 1.7e-55 221.1 412 33.5
Rhsim13G0170100 Rhododendron simsii HOM05D007484 ORTHO05D008290 3.8e-55 219.9 457 33.3
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 3.0e-52 210.3 419 32.2
Medtr7g076760 Medicago truncatula HOM05D007484 ORTHO05D008290 8.8e-52 208.8 422 31.3
Prupe.4G036700 Prunus persica HOM05D007484 ORTHO05D008290 1.2e-51 208.4 424 31.1
Atru.chr10.2009 Acer truncatum HOM05D007484 ORTHO05D008290 4.1e-49 199.9 435 30.3
PGR004G1436 Punica granatum HOM05D007484 ORTHO05D008290 5.9e-48 196.1 401 29.4
Medtr7g050670 Medicago truncatula HOM05D007484 ORTHO05D008290 1.0e-47 195.3 419 29.4
VMungo0540G2082 Vigna mungo HOM05D007484 ORTHO05D008290 5.0e-47 193.0 419 29.8
Medtr7g076570 Medicago truncatula HOM05D007484 ORTHO05D008290 1.9e-46 191.0 412 30.1
Medtr4g088845 Medicago truncatula HOM05D007484 ORTHO05D008290 2.5e-46 190.7 422 28.9
Peaxi162Scf00083g00015 Petunia axillaris HOM05D007484 ORTHO05D008290 2.5e-46 190.7 408 28.9
Phvul.006G192000 Phaseolus vulgaris HOM05D007484 ORTHO05D008290 5.5e-46 189.5 408 30.6
Glyma.13G246100 Glycine max HOM05D007484 ORTHO05D008290 4.7e-45 186.4 446 29.1
Duzib192G0019 Durio zibethinus HOM05D007484 ORTHO05D008290 6.1e-45 186.0 344 32.6
CANSAT56G1153 Cannabis sativa HOM05D007484 ORTHO05D008290 8.0e-45 185.7 418 28.7
TWI63G0466 Tripterygium wilfordii HOM05D007484 ORTHO05D008290 3.0e-44 183.7 426 28.9
Actinidia26998 Actinidia chinensis HOM05D007484 ORTHO05D008290 3.7e-42 176.8 426 30.5
Peaxi162Scf00149g00517 Petunia axillaris HOM05D007484 ORTHO05D008290 1.8e-41 174.5 397 28.5
Nn1g06758 Nelumbo nucifera HOM05D007484 ORTHO05D008290 5.4e-41 172.9 438 27.9
MD10G1303300 Malus domestica HOM05D007484 ORTHO05D008290 2.7e-40 170.6 428 29.2
PGSC0003DMG400043893 Solanum tuberosum HOM05D007484 ORTHO05D008290 1.7e-39 167.9 420 28.3
PGSC0003DMG400037537 Solanum tuberosum HOM05D007484 ORTHO05D008290 1.9e-38 164.5 422 28.9
TWI38G1471 Tripterygium wilfordii HOM05D007484 ORTHO05D008290 6.1e-37 159.5 367 29.4
Solyc02g079120.1 Solanum lycopersicum HOM05D007484 ORTHO05D008290 1.4e-36 158.3 406 28.6
Lj6g0012024 Lotus japonicus HOM05D007484 ORTHO05D008290 4.0e-36 156.8 445 25.4
GSVIVG01003193001 Vitis vinifera HOM05D007484 ORTHO05D003151 8.9e-36 155.6 283 35.0
SalBow8G0887 Salvia bowleyana HOM05D007484 ORTHO05D008290 1.2e-35 155.2 354 29.4
Nitab4.5_0000190g0090 Nicotiana tabacum HOM05D007484 ORTHO05D008290 2.2e-34 151.0 415 26.5
Thhalv10023890m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 8.3e-34 149.1 115 59.1
Aqoxy4G00756 Aquilegia oxysepala HOM05D007484 ORTHO05D008290 2.4e-33 147.5 459 27.9
Nitab4.5_0009994g0020 Nicotiana tabacum HOM05D007484 ORTHO05D008290 3.2e-33 147.1 412 26.7
CARHR053390 Cardamine hirsuta HOM05D007484 ORTHO05D008290 2.3e-31 141.0 151 44.4
SGA_v2.0_scaffold739G53544 Striga asiatica HOM05D007484 ORTHO05D008290 3.6e-29 133.7 402 26.4
PGSC0003DMG400022354 Solanum tuberosum HOM05D007484 ORTHO05D008290 9.8e-27 125.6 284 28.9
C06p16460 Brassica napus HOM05D007484 ORTHO05D008290 1.9e-25 121.3 113 58.4
Aqoxy4G00512 Aquilegia oxysepala HOM05D000312 ORTHO05D000221 4.6e-24 116.7 445 26.3
Migut.M01212 Erythranthe guttata HOM05D007484 ORTHO05D008290 7.8e-24 115.9 409 24.9
BraA01t03150Z Brassica rapa HOM05D007484 ORTHO05D008290 9.5e-22 109.0 101 59.4
Cpa.g.sc27.122 Carica papaya HOM05D007484 ORTHO05D008290 2.8e-21 107.5 294 28.9
Cpa.g.sc27.126 Carica papaya HOM05D007484 ORTHO05D008290 4.7e-21 106.7 300 29.0
MBI18_g07609_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000368 4.7e-21 106.7 450 25.1
Actinidia26997 Actinidia chinensis HOM05D007484 ORTHO05D008290 1.5e-19 101.7 245 29.4
MBI02_g05998_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000368 3.4e-19 100.5 436 26.1
MBI03_g20843_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D000368 9.8e-19 99.0 433 23.6
TAR623G0165 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.9e-18 97.4 431 25.3
CARHR053010 Cardamine hirsuta HOM05D007484 ORTHO05D008290 7.1e-17 92.8 64 67.2
MBI18_g07602_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D008290 4.6e-16 90.1 470 23.2
Sc14g0001610 Simmondsia chinensis HOM05D007484 ORTHO05D008290 2.3e-15 87.8 432 22.5
TPR.G4556 Trifolium pratense HOM05D007484 ORTHO05D008290 3.9e-15 87.0 135 30.4
GSVIVG01025608001 Vitis vinifera HOM05D003242 ORTHO05D003593 8.6e-15 85.9 301 26.6
Thecc.06G199300 Theobroma cacao HOM05D007484 ORTHO05D008290 1.5e-14 85.1 141 32.6
Dinv37215 Davidia involucrata HOM05D003242 ORTHO05D003593 1.9e-14 84.7 424 23.8
Nn1g06755 Nelumbo nucifera HOM05D001396 ORTHO05D000493 1.6e-13 81.6 434 22.6
MBI02_g05996_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D008290 4.7e-13 80.1 435 23.4
CARHR053000 Cardamine hirsuta HOM05D007484 ORTHO05D008290 8.1e-13 79.3 64 57.8
Oeu020132.1 Olea europaea HOM05D003087 ORTHO05D003312 1.4e-12 78.6 450 20.9
Oeu024369.3 Olea europaea HOM05D003242 ORTHO05D003593 1.4e-12 78.6 251 25.5
Sopen07g028290 Solanum pennellii HOM05D001396 ORTHO05D000493 1.4e-12 78.6 336 26.2
Rhsim06G0214600 Rhododendron simsii HOM05D003087 ORTHO05D003312 5.2e-12 76.6 436 22.9
CSS0047483 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D008290 6.8e-12 76.3 441 24.7
MD03G1208600 Malus domestica HOM05D003087 ORTHO05D003312 6.8e-12 76.3 443 23.0
unitig_62.g23170 Utricularia gibba HOM05D015310 ORTHO05D014910 2.6e-11 74.3 253 28.1
MBI02_g05995_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000368 3.4e-11 73.9 425 23.3
MBI18_g07596_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D008290 3.4e-11 73.9 376 23.4
Nn1g03911 Nelumbo nucifera HOM05D000576 ORTHO05D003312 3.4e-11 73.9 460 23.5
PSO478G1751 Papaver somniferum HOM05D000051 ORTHO05D000015 3.4e-11 73.9 193 27.5
Dinv37214 Davidia involucrata HOM05D003242 ORTHO05D003593 4.4e-11 73.6 317 23.7
PSO541G0345 Papaver somniferum HOM05D000051 ORTHO05D000015 1.3e-10 72.0 414 22.0
Dinv39820 Davidia involucrata HOM05D001396 ORTHO05D000493 1.7e-10 71.6 420 22.6
MBI16_g01187_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D000368 2.9e-10 70.9 422 22.3
Aqoxy1G03313 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 6.4e-10 69.7 426 22.5
CDE02G0635 Ceratophyllum demersum HOM05D000312 ORTHO05D000493 8.4e-10 69.3 213 25.8
CDE05G1832 Ceratophyllum demersum HOM05D000051 ORTHO05D000493 1.4e-09 68.6 222 27.0
Aa31LG3G10740 Aethionema arabicum HOM05D003087 ORTHO05D003312 2.4e-09 67.8 449 22.5
MSTRG.15934 Avicennia marina HOM05D007484 ORTHO05D008290 3.2e-09 67.4 139 32.4
MBI18_g06655_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 3.2e-09 67.4 235 26.4
Nn6g33666 Nelumbo nucifera HOM05D000051 ORTHO05D000493 3.2e-09 67.4 245 24.9
Dinv39822 Davidia involucrata HOM05D001396 ORTHO05D000493 5.4e-09 66.6 221 25.3
PGR004G1577 Punica granatum HOM05D007484 ORTHO05D008290 5.4e-09 66.6 266 24.8
Lj6g0025252 Lotus japonicus HOM05D003087 ORTHO05D003312 9.2e-09 65.9 455 20.2
RcHm_v2.0_Chr5g0059961 Rosa chinensis HOM05D000051 ORTHO05D000015 1.6e-08 65.1 419 21.2
GSVIVG01016605001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.6e-08 65.1 269 24.2
QL05p062700 Quercus lobata HOM05D000051 ORTHO05D000015 2.1e-08 64.7 421 22.3
TAR362G1194 Trochodendron aralioides HOM05D000576 ORTHO05D003312 2.7e-08 64.3 252 27.0
Nn4g26661 Nelumbo nucifera HOM05D001396 ORTHO05D000493 3.5e-08 63.9 502 23.1
Gohir.A13G140200 Gossypium hirsutum HOM05D000051 ORTHO05D000015 4.6e-08 63.5 426 21.4
Lalb_Chr03g0040371 Lupinus albus HOM05D000576 ORTHO05D000368 4.6e-08 63.5 255 24.7
Nn1g07075 Nelumbo nucifera HOM05D000051 ORTHO05D000015 4.6e-08 63.5 233 25.3
HPP92_011114 Vanilla planifolia HOM05D014114 ORTHO05D000368 4.6e-08 63.5 428 20.6
EL10Ac4g07903 Beta vulgaris HOM05D003087 ORTHO05D003312 6.0e-08 63.2 375 25.6
FAN19G2457 Fragaria x ananassa HOM05D000576 ORTHO05D000368 6.0e-08 63.2 365 22.5
Rhsim06G0151200 Rhododendron simsii HOM05D000312 ORTHO05D000493 6.0e-08 63.2 227 25.6
Duzib138G1539 Durio zibethinus HOM05D000051 ORTHO05D011342 7.8e-08 62.8 357 23.5
MD11G1223200 Malus domestica HOM05D003087 ORTHO05D003312 1.0e-07 62.4 444 23.2
Peaxi162Scf00853g00215 Petunia axillaris HOM05D000051 ORTHO05D011342 1.7e-07 61.6 424 23.8
FvH4_1g04280 Fragaria vesca HOM05D000576 ORTHO05D000368 2.3e-07 61.2 365 22.5
PSO384G1928 Papaver somniferum HOM05D000051 ORTHO05D000015 2.3e-07 61.2 251 27.9
TAR624G1446 Trochodendron aralioides HOM05D001396 ORTHO05D000493 3.0e-07 60.8 435 22.1
Cpa.g.sc8.221 Carica papaya HOM05D003087 ORTHO05D003312 6.6e-07 59.7 291 27.5
Nn3g18635 Nelumbo nucifera HOM05D000051 ORTHO05D000015 6.6e-07 59.7 428 23.8
QL04p018450 Quercus lobata HOM05D001396 ORTHO05D000493 8.6e-07 59.3 417 20.1
RcHm_v2.0_Chr5g0028391 Rosa chinensis HOM05D000051 ORTHO05D000015 1.1e-06 58.9 414 20.8
TAR633G2125 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.1e-06 58.9 388 22.4
RcHm_v2.0_Chr2g0160731 Rosa chinensis HOM05D008065 ORTHO05D010197 1.5e-06 58.5 361 23.3
Dinv15484 Davidia involucrata HOM05D001396 ORTHO05D000493 1.9e-06 58.2 301 23.3
PSO063G7649 Papaver somniferum HOM05D000051 ORTHO05D000015 1.9e-06 58.2 442 21.0
Gohir.A05G367500 Gossypium hirsutum HOM05D023832 ORTHO05D022144 2.5e-06 57.8 380 23.4
Nitab4.5_0004837g0050 Nicotiana tabacum HOM05D000051 ORTHO05D000015 2.5e-06 57.8 413 21.8
Dinv39819 Davidia involucrata HOM05D001396 ORTHO05D000493 3.3e-06 57.4 414 22.2
Nn5g27409 Nelumbo nucifera HOM05D000576 ORTHO05D000368 3.3e-06 57.4 277 23.5
QL01p041826 Quercus lobata HOM05D000051 ORTHO05D000015 4.3e-06 57.0 238 23.1
Aqoxy6G02780 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 5.6e-06 56.6 376 22.3
PSO339G2012 Papaver somniferum HOM05D000051 ORTHO05D000015 5.6e-06 56.6 429 23.1
TAR371G0326 Trochodendron aralioides HOM05D000312 ORTHO05D000221 5.6e-06 56.6 203 25.1
TAR371G0799 Trochodendron aralioides HOM05D000312 ORTHO05D000221 5.6e-06 56.6 203 25.1
Actinidia32125 Actinidia chinensis HOM05D000617 ORTHO05D000229 7.3e-06 56.2 177 29.9
HPP92_011100 Vanilla planifolia HOM05D014114 ORTHO05D008290 9.6e-06 55.8 306 22.2


User provided reference genes

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