Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 2.4e-173 612.1 309 100.0
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 2.0e-167 592.4 311 96.1
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 2.0e-167 592.4 311 96.1
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 2.0e-167 592.4 311 96.1
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 9.8e-167 590.1 311 92.3
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.2e-166 589.0 311 96.1
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 7.0e-165 583.9 311 94.5
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 2.3e-163 578.9 311 91.0
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 9.5e-162 573.5 309 93.2
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 8.0e-161 570.5 311 92.6
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 1.8e-160 569.3 311 89.4
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.9e-149 532.7 309 83.5
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 2.1e-145 519.2 309 81.2
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.4e-141 506.5 305 78.7
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.3e-139 500.0 305 77.4
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.0e-139 498.8 305 77.0
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 5.1e-139 498.0 305 78.4
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.1e-138 496.9 305 78.0
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 1.1e-138 496.9 305 79.0
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 2.5e-138 495.7 305 77.0
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 4.3e-138 495.0 307 76.5
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 4.3e-138 495.0 310 76.8
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 9.5e-138 493.8 305 78.7
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.6e-137 493.0 305 77.4
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 2.1e-137 492.7 305 77.4
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 2.8e-137 492.3 305 77.4
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 3.6e-137 491.9 307 76.2
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 4.7e-137 491.5 305 77.7
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 6.2e-137 491.1 305 76.7
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 8.1e-137 490.7 305 76.4
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.4e-136 490.0 305 76.4
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.4e-136 490.0 305 77.0
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 1.4e-136 490.0 305 77.7
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.4e-136 490.0 310 76.5
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.8e-136 489.6 307 75.9
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.8e-136 489.6 305 77.4
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 1.8e-136 489.6 305 76.1
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.3e-136 489.2 307 75.6
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 3.1e-136 488.8 307 76.2
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 4.0e-136 488.4 305 75.7
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 4.0e-136 488.4 306 77.8
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 5.2e-136 488.0 305 76.1
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 8.9e-136 487.3 305 75.7
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.5e-135 486.5 305 75.7
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.5e-135 486.5 305 75.4
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 2.6e-135 485.7 305 75.4
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 2.6e-135 485.7 307 75.9
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 3.4e-135 485.3 305 76.1
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 3.4e-135 485.3 305 75.1
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 4.4e-135 485.0 305 74.8
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 5.8e-135 484.6 305 76.1
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 7.6e-135 484.2 305 75.7
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 9.9e-135 483.8 310 75.5
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 9.9e-135 483.8 310 75.5
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 9.9e-135 483.8 305 75.7
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.3e-134 483.4 305 75.7
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.7e-134 483.0 310 75.5
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 2.2e-134 482.6 305 75.4
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 2.2e-134 482.6 305 76.7
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 2.9e-134 482.3 305 76.7
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 3.7e-134 481.9 305 76.4
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 4.9e-134 481.5 305 76.4
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 6.4e-134 481.1 305 75.7
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 6.4e-134 481.1 305 74.8
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 6.4e-134 481.1 305 76.4
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 8.3e-134 480.7 305 75.4
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.4e-133 479.9 305 75.4
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.9e-133 479.6 305 76.1
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.9e-133 479.6 305 76.1
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 1.9e-133 479.6 309 76.1
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 3.2e-133 478.8 305 76.1
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 7.1e-133 477.6 305 75.4
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 9.2e-133 477.2 305 74.1
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 9.2e-133 477.2 307 75.2
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 9.2e-133 477.2 305 75.1
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 9.2e-133 477.2 305 74.8
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.2e-132 476.9 305 74.8
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.2e-132 476.9 305 74.4
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.2e-132 476.9 305 74.4
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 1.6e-132 476.5 305 75.7
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 4.6e-132 474.9 305 72.8
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 7.8e-132 474.2 305 74.1
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 7.8e-132 474.2 305 74.1
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.3e-131 473.4 305 74.1
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.3e-131 473.4 305 74.1
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 2.3e-131 472.6 310 74.2
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 3.9e-131 471.9 305 73.8
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 5.1e-131 471.5 309 74.4
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 8.6e-131 470.7 305 73.4
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 8.6e-131 470.7 326 71.8
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.5e-130 469.9 335 69.9
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 1.5e-130 469.9 305 74.8
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 2.5e-130 469.2 305 73.8
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 4.3e-130 468.4 305 72.1
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.6e-129 466.5 305 73.1
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 4.7e-129 464.9 305 73.4
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.4e-128 463.4 305 72.1
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.6e-127 459.1 305 72.8
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 9.9e-127 457.2 305 71.5
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.3e-126 456.8 372 63.7
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 1.1e-125 453.8 305 71.5
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.4e-125 453.4 308 69.5
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.0e-123 447.2 310 69.4
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.3e-123 446.0 310 70.0
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 4.3e-122 441.8 305 69.5
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 3.6e-121 438.7 305 68.2
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 3.6e-121 438.7 305 68.2
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 8.1e-121 437.6 305 68.2
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.8e-120 436.4 305 67.5
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.7e-118 429.9 397 57.4
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 6.0e-116 421.4 305 68.2
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.5e-114 416.0 305 63.9
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 4.5e-111 405.2 307 62.5
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.2e-110 402.9 305 61.6
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 8.7e-107 391.0 310 60.0
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 2.5e-101 372.9 305 63.3
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 4.2e-101 372.1 240 75.8
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 2.3e-99 366.3 309 58.9
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 8.2e-97 357.8 311 58.5
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.1e-96 357.5 261 68.2
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.5e-90 336.3 226 71.7
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 9.0e-88 327.8 225 73.3
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.9e-85 320.1 230 69.6
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 2.4e-80 303.1 149 99.3
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 6.1e-76 288.5 159 93.7
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 3.9e-75 285.8 210 65.2
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 2.0e-71 273.5 160 83.1
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 1.8e-64 250.4 143 81.1
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.8e-59 233.8 186 64.0
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 4.2e-53 212.6 153 64.7
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 4.0e-51 206.1 306 43.1
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 9.2e-48 194.9 127 75.6
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.5e-42 177.6 80 100.0
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.5e-37 161.0 89 82.0
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.9e-37 160.6 142 52.8
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 7.3e-37 158.7 308 33.8
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 9.5e-37 158.3 83 81.9
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.2e-36 157.9 80 87.5
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 6.2e-36 155.6 79 86.1
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.8e-35 154.1 310 34.5
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 9.8e-34 148.3 207 44.4
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 6.8e-27 125.6 114 57.9
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 9.8e-26 121.7 82 65.9
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.1e-21 108.2 58 82.8
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 3.3e-21 106.7 60 80.0
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 3.6e-20 103.2 301 28.9
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 1.8e-19 100.9 55 80.0
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 3.0e-14 83.6 73 63.0
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.4e-11 74.7 209 27.8


User provided reference genes

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