Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.3e-113 413.3 236 100.0
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 7.1e-101 370.9 236 88.6
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 2.7e-100 369.0 236 88.6
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 2.7e-100 369.0 236 88.6
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 3.5e-100 368.6 236 88.1
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 4.6e-100 368.2 236 88.1
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.6e-97 359.8 236 86.4
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 6.9e-96 354.4 235 83.8
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 6.9e-96 354.4 235 84.3
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.5e-95 353.2 235 83.8
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 5.8e-95 351.3 237 84.8
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 6.0e-92 341.3 235 86.0
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 6.7e-91 337.8 237 85.7
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.7e-78 296.6 241 71.0
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 6.7e-75 284.6 240 70.8
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 5.9e-71 271.6 239 66.9
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.7e-70 270.0 237 67.9
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.7e-70 270.0 237 68.8
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 2.9e-70 269.2 242 67.4
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 2.9e-70 269.2 240 67.1
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.6e-68 263.5 240 68.8
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.6e-68 263.5 236 64.8
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.6e-68 262.3 238 63.0
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 4.7e-68 261.9 236 64.8
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.0e-67 260.8 238 68.1
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 2.3e-67 259.6 239 68.2
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 3.0e-67 259.2 243 67.1
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 5.1e-67 258.5 243 66.7
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.1e-66 257.3 257 63.8
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.1e-66 257.3 237 66.7
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 2.0e-66 256.5 242 64.9
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.3e-66 255.8 236 64.8
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 5.7e-66 255.0 236 66.9
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 1.7e-65 253.4 236 66.9
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.7e-65 253.4 236 67.4
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 2.2e-65 253.1 237 65.0
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 3.7e-65 252.3 236 66.5
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 8.2e-65 251.1 248 58.1
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 4.1e-64 248.8 237 66.7
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 4.1e-64 248.8 237 66.7
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 7.0e-64 248.1 230 65.2
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 9.1e-64 247.7 239 59.8
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.2e-63 247.3 233 67.4
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.2e-63 247.3 267 60.7
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 7.7e-63 244.6 241 63.5
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 7.7e-63 244.6 233 67.0
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 7.7e-63 244.6 245 62.0
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.3e-62 243.8 186 75.8
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.3e-62 243.8 236 59.7
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.3e-62 243.8 236 59.7
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 2.2e-62 243.0 231 67.5
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 5.0e-62 241.9 239 56.1
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 8.5e-62 241.1 234 64.5
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 1.9e-61 240.0 245 61.6
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.9e-61 240.0 239 55.2
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 2.5e-61 239.6 168 79.2
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.5e-61 239.6 242 62.0
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 3.2e-61 239.2 236 64.4
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 3.2e-61 239.2 236 64.0
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 9.4e-61 237.7 236 56.8
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.6e-60 236.9 240 55.0
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 2.7e-60 236.1 237 62.4
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 6.1e-60 235.0 236 57.6
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 8.0e-60 234.6 182 78.0
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.0e-59 234.2 171 77.2
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.4e-59 233.8 245 54.7
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.0e-59 232.6 198 71.2
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 4.0e-59 232.3 184 72.3
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 5.2e-59 231.9 238 60.1
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 6.7e-59 231.5 189 67.7
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.1e-58 230.7 237 58.2
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 1.5e-58 230.3 237 61.6
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 2.6e-58 229.6 224 65.6
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.6e-58 229.6 240 56.7
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 4.4e-58 228.8 244 56.1
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 4.4e-58 228.8 238 58.0
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 7.5e-58 228.0 250 56.4
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.7e-57 226.9 243 58.4
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.7e-57 226.9 232 55.6
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 1.7e-57 226.9 230 60.4
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 4.8e-57 225.3 186 69.4
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.1e-56 224.2 186 66.1
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.1e-56 224.2 173 75.7
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.8e-56 223.4 229 55.9
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 3.1e-56 222.6 239 54.0
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 3.1e-56 222.6 270 48.9
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 7.0e-56 221.5 185 70.3
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 2.6e-55 219.5 236 58.1
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 4.5e-55 218.8 183 70.5
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 4.5e-55 218.8 183 70.5
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.3e-54 217.2 188 63.3
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.2e-54 216.5 198 59.6
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 2.9e-54 216.1 234 63.2
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 5.0e-54 215.3 202 60.9
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 2.5e-53 213.0 258 58.5
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 4.2e-53 212.2 192 64.6
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 5.5e-53 211.8 246 52.0
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 3.6e-52 209.1 255 50.6
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 8.0e-52 208.0 185 62.2
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 2.6e-50 203.0 246 49.2
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 2.2e-49 199.9 250 49.2
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.1e-48 197.6 174 66.1
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.2e-45 186.0 195 54.4
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.2e-44 184.1 237 54.0
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 8.8e-43 177.9 183 53.6
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 8.8e-43 177.9 308 40.3
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.7e-41 173.7 191 51.8
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 5.4e-40 168.7 185 50.3
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.1e-36 156.8 130 72.3
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 8.0e-36 154.8 133 58.6
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 9.8e-34 147.9 199 45.2
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 2.2e-33 146.7 261 45.6
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.4e-33 145.2 126 61.1
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 5.4e-32 142.1 111 66.7
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 4.6e-31 139.0 149 52.3
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 7.8e-31 138.3 97 70.1
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 5.0e-30 135.6 93 71.0
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 4.0e-27 125.9 99 61.6
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 4.9e-25 119.0 202 41.6
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.9e-24 117.1 71 76.1
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 9.2e-24 114.8 100 56.0
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 4.6e-23 112.5 153 45.1
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.7e-22 110.5 135 43.7
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.9e-21 107.1 79 62.0
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 4.3e-21 105.9 238 34.0
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 5.6e-21 105.5 239 35.1
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 7.3e-21 105.1 238 34.0
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 9.5e-21 104.8 238 33.6
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 1.6e-20 104.0 135 45.9
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 4.7e-20 102.4 89 74.2
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.9e-17 93.2 195 39.5
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.2e-15 87.8 65 70.8
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.7e-14 84.0 130 39.2
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.9e-13 80.5 191 31.9
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.3e-09 67.8 108 40.7
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 4.9e-09 65.9 51 66.7
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 4.9e-09 65.9 108 38.9
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 3.2e-08 63.2 119 36.1
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.6e-07 60.8 187 27.8
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 8.6e-06 55.1 68 51.5


User provided reference genes

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