Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 0.0e+00 1526.9 824 100.0
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 2.2e-237 826.2 994 55.7
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 3.1e-236 822.4 1004 55.4
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 7.2e-225 784.6 983 55.4
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 8.0e-224 781.2 993 54.7
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 2.0e-222 776.5 994 54.6
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 3.6e-208 729.2 993 51.4
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.5e-163 579.7 1116 42.8
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.7e-147 526.9 1124 40.6
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 2.7e-147 526.9 1173 38.1
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.6e-142 510.4 1038 41.0
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 4.5e-134 483.0 915 45.0
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 1.8e-127 461.1 899 44.4
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 9.1e-127 458.8 899 44.3
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 2.0e-126 457.6 913 43.8
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.8e-122 444.5 966 41.5
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.2e-106 389.8 906 38.4
A07p05110 Brassica napus HOM05D008497 ORTHO05D003355 1.3e-45 189.1 608 34.7
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 6.6e-45 186.8 1170 28.7
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 2.5e-44 184.9 974 29.9
BcaC04g22710 Brassica carinata HOM05D008497 ORTHO05D027096 7.4e-28 130.2 113 68.1
BolC9t54519H Brassica oleracea HOM05D008497 ORTHO05D027096 7.4e-28 130.2 113 68.1
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 3.7e-27 127.9 169 46.2
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.9e-24 118.2 364 31.6
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 8.4e-24 116.7 169 43.2
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 8.4e-24 116.7 169 43.2
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.1e-22 112.1 203 38.4
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 3.3e-20 104.8 103 50.5
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 4.3e-20 104.4 103 48.5
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 5.7e-20 104.0 94 50.0
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.2e-19 102.1 157 36.9
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.8e-19 101.7 92 54.3
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 8.2e-19 100.1 92 52.2
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 3.1e-18 98.2 92 50.0
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.1e-18 97.8 235 35.3
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 6.9e-18 97.1 104 44.2
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.5e-17 95.9 88 51.1
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.0e-17 95.5 177 40.1
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 2.6e-17 95.1 405 25.4
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 3.4e-17 94.7 95 48.4
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.4e-17 94.7 97 45.4
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 5.9e-17 94.0 216 38.0
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 5.9e-17 94.0 95 47.4
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.7e-17 93.6 105 45.7
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 7.7e-17 93.6 92 50.0
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 7.7e-17 93.6 87 50.6
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.7e-16 92.4 88 50.0
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 1.7e-16 92.4 116 43.1
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 2.2e-16 92.0 95 46.3
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 5.0e-16 90.9 100 44.0
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 6.5e-16 90.5 97 48.5
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 6.5e-16 90.5 113 44.2
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 8.5e-16 90.1 284 28.2
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 8.5e-16 90.1 264 33.3
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-15 89.7 316 34.5
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 3.2e-15 88.2 935 25.2
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 9.4e-15 86.7 162 35.8
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.2e-14 86.3 186 32.8
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.1e-14 85.5 580 26.2
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 2.7e-14 85.1 183 30.6
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 4.6e-14 84.3 288 31.6
BcaC06g31928 Brassica carinata HOM05D008497 ORTHO05D003355 4.6e-14 84.3 118 49.2
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 4.6e-14 84.3 186 31.2
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 6.1e-14 84.0 161 34.8
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 6.1e-14 84.0 387 25.3
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 7.9e-14 83.6 225 29.8
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.0e-13 83.2 211 30.3
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 1.4e-13 82.8 438 25.6
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 1.4e-13 82.8 276 30.1
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.4e-13 82.8 164 34.8
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.3e-13 82.0 177 36.2
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 3.0e-13 81.6 430 23.7
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 5.1e-13 80.9 91 45.1
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.1e-12 79.7 513 25.9
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 1.1e-12 79.7 87 44.8
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 1.5e-12 79.3 86 44.2
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 2.0e-12 79.0 168 32.7
C09p16040 Brassica napus HOM05D008497 ORTHO05D027096 2.0e-12 79.0 68 67.6
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 2.0e-12 79.0 405 27.2
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 3.3e-12 78.2 187 32.1
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 4.3e-12 77.8 298 26.5
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.3e-11 76.3 208 29.8
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 1.3e-11 76.3 191 27.7
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 2.2e-11 75.5 160 31.9
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.8e-11 75.1 87 41.4
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 4.8e-11 74.3 135 32.6
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 1.1e-10 73.2 188 31.9
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 1.4e-10 72.8 297 29.0
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.4e-10 72.8 430 25.6
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.4e-10 72.8 86 43.0
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.4e-10 72.8 575 22.8
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.8e-10 72.4 123 35.8
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 3.1e-10 71.6 83 41.0
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 3.1e-10 71.6 257 27.6
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 4.1e-10 71.2 114 35.1
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 4.1e-10 71.2 236 28.0
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 5.3e-10 70.9 96 42.7
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 6.9e-10 70.5 126 34.1
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 6.9e-10 70.5 272 26.1
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.2e-09 69.7 91 37.4
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.2e-09 69.7 866 23.3
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 1.2e-09 69.7 86 45.3
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.5e-09 69.3 77 42.9
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 1.5e-09 69.3 488 25.2
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 2.6e-09 68.6 97 36.1
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 4.5e-09 67.8 511 23.1
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.7e-09 67.0 275 28.7
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 7.7e-09 67.0 83 38.6
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.0e-08 66.6 513 23.8
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.3e-08 66.2 60 53.3
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 1.3e-08 66.2 97 35.1
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.7e-08 65.9 123 34.1
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 2.2e-08 65.5 87 39.1
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 2.9e-08 65.1 95 36.8
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 2.9e-08 65.1 304 27.3
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.8e-08 64.7 86 38.4
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 3.8e-08 64.7 83 36.1
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 3.8e-08 64.7 107 33.6
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.8e-08 64.7 111 36.9
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 6.5e-08 63.9 603 23.2
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 8.5e-08 63.5 87 35.6
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.1e-07 63.2 533 25.3
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.1e-07 63.2 123 31.7
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.1e-07 63.2 76 43.4
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.1e-07 63.2 76 43.4
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.4e-07 62.8 123 31.7
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.4e-07 62.8 83 37.3
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.2e-07 61.6 83 37.3
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 3.2e-07 61.6 832 25.1
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 3.2e-07 61.6 86 31.4
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 4.2e-07 61.2 87 37.9
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 7.2e-07 60.5 108 31.5
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 7.2e-07 60.5 96 32.3
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 7.2e-07 60.5 163 30.1
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 9.4e-07 60.1 114 31.6
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 9.4e-07 60.1 95 38.9
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 1.2e-06 59.7 869 21.3
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.6e-06 59.3 156 30.8
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 2.7e-06 58.5 87 36.8
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 3.6e-06 58.2 99 32.3
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 3.6e-06 58.2 474 22.4
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 3.6e-06 58.2 54 46.3
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 3.6e-06 58.2 559 22.5
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 4.7e-06 57.8 79 39.2
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 6.1e-06 57.4 92 39.1
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 6.1e-06 57.4 73 38.4
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 6.1e-06 57.4 95 32.6
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 7.9e-06 57.0 99 32.3


User provided reference genes

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