Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g01230 Schrenkiella parvula HOM05D013233 ORTHO05D014394 7.1e-58 227.3 132 100.0
BcaC06g31943 Brassica carinata HOM05D013233 ORTHO05D014394 4.9e-43 177.9 129 79.1
Thhalv10023740m.g Eutrema salsugineum HOM05D001293 ORTHO05D014394 4.2e-42 174.9 129 79.1
CARHR048120 Cardamine hirsuta HOM05D001293 ORTHO05D014394 2.4e-37 159.1 129 77.5
BolC9t54524H Brassica oleracea HOM05D013233 ORTHO05D014394 2.0e-36 156.0 111 80.2
BcaC04g22706 Brassica carinata HOM05D013233 ORTHO05D014394 7.6e-36 154.1 111 79.3
A09p13570 Brassica napus HOM05D013233 ORTHO05D014394 1.3e-35 153.3 111 79.3
BraA09t37008Z Brassica rapa HOM05D013233 ORTHO05D014394 1.3e-35 153.3 111 79.3
Carub.0002s0153 Capsella rubella HOM05D013233 ORTHO05D014394 3.1e-29 132.1 106 77.4
AT1G63295 Arabidopsis thaliana HOM05D013233 ORTHO05D014394 9.4e-26 120.6 104 72.1
BraA09t37009Z Brassica rapa HOM05D013233 ORTHO05D014394 3.0e-24 115.5 102 65.7
AL2G11860 Arabidopsis lyrata HOM05D013233 ORTHO05D014394 4.4e-15 85.1 83 66.3
EL10Ac5g12774 Beta vulgaris HOM05D001293 ORTHO05D001143 1.7e-11 73.2 99 41.4
Gohir.D12G229200 Gossypium hirsutum HOM05D001293 ORTHO05D001143 1.5e-10 70.1 105 39.0
Gorai.008G245400 Gossypium raimondii HOM05D001293 ORTHO05D001143 1.5e-10 70.1 105 39.0
Gohir.A12G226800 Gossypium hirsutum HOM05D001293 ORTHO05D001143 1.9e-10 69.7 105 38.1
Ciclev10023664m.g Citrus clementina HOM05D001293 ORTHO05D001143 3.2e-10 68.9 97 49.5
Eucgr.A02795 Eucalyptus grandis HOM05D001293 ORTHO05D001143 4.2e-10 68.6 105 39.0
CANSAT21G1207 Cannabis sativa HOM05D001293 ORTHO05D001143 1.2e-09 67.0 118 39.8
Eucgr.E00569 Eucalyptus grandis HOM05D001293 ORTHO05D001143 1.6e-09 66.6 96 42.7
Glyma.11G025200 Glycine max HOM05D001293 ORTHO05D001143 3.6e-09 65.5 123 37.4
AUR62010609 Chenopodium quinoa HOM05D001293 ORTHO05D001143 4.7e-09 65.1 105 41.9
ECA233G2773 Erigeron canadensis HOM05D001293 ORTHO05D001143 8.0e-09 64.3 96 41.7
Glyma.01G218000 Glycine max HOM05D001293 ORTHO05D001143 8.0e-09 64.3 104 42.3
TPR.G6636 Trifolium pratense HOM05D001293 ORTHO05D001143 1.0e-08 63.9 96 45.8
CiPaw.11G138200 Carya illinoinensis HOM05D001293 ORTHO05D001143 1.4e-08 63.5 106 36.8
Hma1.2p1_1943F.1_g308490 Hydrangea macrophylla HOM05D001293 ORTHO05D001143 1.4e-08 63.5 103 37.9
Aa31LG10G15340 Aethionema arabicum HOM05D001293 ORTHO05D001143 2.3e-08 62.8 104 44.2
HanXRQChr07g0187071 Helianthus annuus HOM05D001293 ORTHO05D001143 2.3e-08 62.8 93 39.8
Lsat_1_v5_gn_6_5760 Lactuca sativa HOM05D001293 ORTHO05D001143 3.0e-08 62.4 93 39.8
MSTRG.13834 Avicennia marina HOM05D001293 ORTHO05D001143 5.2e-08 61.6 116 34.5
AUR62017251 Chenopodium quinoa HOM05D001293 ORTHO05D001143 5.2e-08 61.6 97 43.3
Cfa008315 Carpinus fangiana HOM05D001293 ORTHO05D001143 6.7e-08 61.2 126 34.1
Psat2g182000 Pisum sativum HOM05D001293 ORTHO05D001143 6.7e-08 61.2 105 42.9
Cfa012145 Carpinus fangiana HOM05D001293 ORTHO05D001143 8.8e-08 60.8 97 40.2
Haze_08887 Corylus avellana HOM05D001293 ORTHO05D001143 8.8e-08 60.8 105 33.3
Haze_08890 Corylus avellana HOM05D001293 ORTHO05D001143 8.8e-08 60.8 105 33.3
PGR042G2116 Punica granatum HOM05D001293 ORTHO05D001143 8.8e-08 60.8 93 46.2
TAR636G2976 Trochodendron aralioides HOM05D001293 ORTHO05D001143 1.2e-07 60.5 104 39.4
Lj8A25T66 Lonicera japonica HOM05D001293 ORTHO05D001143 1.5e-07 60.1 105 35.2
COL.COLO4_34428 Corchorus olitorius HOM05D001293 ORTHO05D001143 2.0e-07 59.7 67 46.3
MBI17_g42122_MAGBIO Magnolia biondii HOM05D001293 ORTHO05D001143 2.0e-07 59.7 104 41.3
MBI18_g09034_MAGBIO Magnolia biondii HOM05D001293 ORTHO05D001143 2.0e-07 59.7 97 40.2
Nitab4.5_0008905g0020 Nicotiana tabacum HOM05D001293 ORTHO05D001143 2.0e-07 59.7 105 41.0
THA.LOC104818080 Tarenaya hassleriana HOM05D013233 ORTHO05D014394 2.0e-07 59.7 39 71.8
Phvul.002G287608 Phaseolus vulgaris HOM05D001293 ORTHO05D001143 2.6e-07 59.3 124 32.3
Hund11488 Selenicereus undatus HOM05D001293 ORTHO05D001143 2.6e-07 59.3 97 43.3
Atru.chr9.2203 Acer truncatum HOM05D001293 ORTHO05D001143 4.4e-07 58.5 105 40.0
MSTRG.92 Avicennia marina HOM05D001293 ORTHO05D001143 5.7e-07 58.2 97 42.3
COL.COLO4_14305 Corchorus olitorius HOM05D001293 ORTHO05D001143 5.7e-07 58.2 122 36.9
FAN13G0217 Fragaria x ananassa HOM05D001293 ORTHO05D001143 5.7e-07 58.2 98 42.9
Glyma.05G205900 Glycine max HOM05D001293 ORTHO05D001143 5.7e-07 58.2 116 34.5
Prupe.5G096200 Prunus persica HOM05D001293 ORTHO05D001143 5.7e-07 58.2 91 48.4
Ca_10773_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 7.5e-07 57.8 104 40.4
Dinv38963 Davidia involucrata HOM05D001293 ORTHO05D001143 7.5e-07 57.8 96 43.8
Duzib084G1237 Durio zibethinus HOM05D001293 ORTHO05D001143 7.5e-07 57.8 105 39.0
FvH4_5g02000 Fragaria vesca HOM05D001293 ORTHO05D001143 7.5e-07 57.8 97 43.3
FAN18G3953 Fragaria x ananassa HOM05D001293 ORTHO05D001143 7.5e-07 57.8 97 43.3
TPR.G6638 Trifolium pratense HOM05D001293 ORTHO05D001143 7.5e-07 57.8 102 44.1
MBI17_g45843_MAGBIO Magnolia biondii HOM05D001293 ORTHO05D001143 9.7e-07 57.4 104 40.4
Sc22g0000180 Simmondsia chinensis HOM05D001293 ORTHO05D001143 9.7e-07 57.4 97 41.2
Thecc.03G275500 Theobroma cacao HOM05D001293 ORTHO05D001143 9.7e-07 57.4 105 39.0
BcaC02g07057 Brassica carinata HOM05D001293 ORTHO05D001143 1.3e-06 57.0 104 39.4
BcaC02g07061 Brassica carinata HOM05D001293 ORTHO05D001143 1.3e-06 57.0 104 39.4
BolC4t28685H Brassica oleracea HOM05D001293 ORTHO05D001143 1.3e-06 57.0 104 39.4
Migut.F00343 Erythranthe guttata HOM05D001293 ORTHO05D001143 1.3e-06 57.0 104 39.4
Glyma.08G012800 Glycine max HOM05D001293 ORTHO05D001143 1.3e-06 57.0 96 36.5
VMungo0720G0217 Vigna mungo HOM05D001293 ORTHO05D001143 1.3e-06 57.0 104 41.3
arahy.Tifrunner.gnm1.ann1.CR9H3C Arachis hypogaea HOM05D001293 ORTHO05D001143 1.7e-06 56.6 87 42.5
Lalb_Chr06g0161121 Lupinus albus HOM05D001293 ORTHO05D001143 1.7e-06 56.6 122 35.2
Lalb_Chr19g0130871 Lupinus albus HOM05D001293 ORTHO05D001143 1.7e-06 56.6 104 38.5
FAN06G1600 Fragaria x ananassa HOM05D001293 ORTHO05D001143 2.2e-06 56.2 107 40.2
MD07G1268200 Malus domestica HOM05D001293 ORTHO05D001143 2.2e-06 56.2 122 36.1
Os04g0533300 Oryza sativa ssp. japonica HOM05D001293 ORTHO05D001143 2.2e-06 56.2 105 39.0
Rhsim07G0091900 Rhododendron simsii HOM05D001293 ORTHO05D001143 2.2e-06 56.2 95 42.1
ATR0680G228 Amborella trichopoda HOM05D001293 ORTHO05D001143 2.8e-06 55.8 97 42.3
Ca_24561_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 2.8e-06 55.8 96 42.7
Ciclev10005899m.g Citrus clementina HOM05D001293 ORTHO05D001143 2.8e-06 55.8 118 37.3
Duzib068G0884 Durio zibethinus HOM05D001293 ORTHO05D001143 2.8e-06 55.8 104 38.5
Eucgr.A02793 Eucalyptus grandis HOM05D001293 ORTHO05D001143 2.8e-06 55.8 104 38.5
Manes.14G026100 Manihot esculenta HOM05D001293 ORTHO05D001143 2.8e-06 55.8 114 39.5
QL08p049449 Quercus lobata HOM05D001293 ORTHO05D001143 2.8e-06 55.8 122 35.2
Thecc.03G176100 Theobroma cacao HOM05D001293 ORTHO05D001143 2.8e-06 55.8 123 36.6
AL2G11940 Arabidopsis lyrata HOM05D013233 ORTHO05D014394 3.7e-06 55.5 40 67.5
PGSC0003DMG400003063 Solanum tuberosum HOM05D001293 ORTHO05D001143 3.7e-06 55.5 97 39.2
THA.LOC104798926 Tarenaya hassleriana HOM05D001293 ORTHO05D001143 3.7e-06 55.5 96 42.7
Potri.012G140800 Populus trichocarpa HOM05D001293 ORTHO05D001143 4.8e-06 55.1 126 35.7
Prupe.2G293900 Prunus persica HOM05D001293 ORTHO05D001143 4.8e-06 55.1 104 40.4
PGR042G1643 Punica granatum HOM05D001293 ORTHO05D001143 4.8e-06 55.1 105 38.1
SalBow1G8201 Salvia bowleyana HOM05D001293 ORTHO05D001143 4.8e-06 55.1 112 39.3
TWI23G0948 Tripterygium wilfordii HOM05D001293 ORTHO05D001143 4.8e-06 55.1 104 40.4
VMungo0251G2272 Vigna mungo HOM05D000678 ORTHO05D002523 4.8e-06 55.1 118 34.7
CiPaw.03G106000 Carya illinoinensis HOM05D001293 ORTHO05D001143 6.3e-06 54.7 126 35.7
Ca_07895_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 6.3e-06 54.7 97 43.3
Dinv28445 Davidia involucrata HOM05D001293 ORTHO05D001143 6.3e-06 54.7 104 37.5
FAN06G3827 Fragaria x ananassa HOM05D001293 ORTHO05D001143 6.3e-06 54.7 106 39.6
Os02g0642200 Oryza sativa ssp. japonica HOM05D001293 ORTHO05D001143 6.3e-06 54.7 128 34.4
Psat6g199640 Pisum sativum HOM05D001293 ORTHO05D001143 6.3e-06 54.7 104 40.4
QL09p014264 Quercus lobata HOM05D001293 ORTHO05D001143 6.3e-06 54.7 104 39.4
QL93p1873_0031 Quercus lobata HOM05D001293 ORTHO05D001143 6.3e-06 54.7 104 39.4
Actinidia27392 Actinidia chinensis HOM05D001293 ORTHO05D001143 8.2e-06 54.3 122 37.7
DCAR_009365 Daucus carota HOM05D001293 ORTHO05D001143 8.2e-06 54.3 106 44.3
Dinv35211 Davidia involucrata HOM05D001293 ORTHO05D001143 8.2e-06 54.3 107 40.2
Thhalv10001646m.g Eutrema salsugineum HOM05D001293 ORTHO05D001143 8.2e-06 54.3 97 40.2
FAN03G1844 Fragaria x ananassa HOM05D001293 ORTHO05D001143 8.2e-06 54.3 107 39.3
Glyma.10G236300 Glycine max HOM05D001293 ORTHO05D001143 8.2e-06 54.3 104 41.3
MD14G1099200 Malus domestica HOM05D001293 ORTHO05D001143 8.2e-06 54.3 93 41.9
Phvul.008G067400 Phaseolus vulgaris HOM05D001293 ORTHO05D001143 8.2e-06 54.3 97 42.3
Potri.014G081300 Populus trichocarpa HOM05D001293 ORTHO05D001143 8.2e-06 54.3 97 41.2
TAR374G0925 Trochodendron aralioides HOM05D001293 ORTHO05D001143 8.2e-06 54.3 98 40.8


User provided reference genes

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