Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 9.2e-189 663.7 408 100.0
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 5.4e-173 611.3 409 92.7
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 4.0e-168 595.1 408 90.2
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 5.2e-168 594.7 411 91.0
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 3.4e-167 592.0 411 91.2
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 1.7e-166 589.7 410 86.6
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 3.8e-166 588.6 409 87.5
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 1.4e-165 586.6 411 84.4
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 1.6e-164 583.2 414 90.3
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 3.9e-163 578.6 417 85.1
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 5.1e-163 578.2 413 84.3
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 9.6e-162 573.9 411 86.4
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 1.4e-160 570.1 414 88.6
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 3.1e-160 568.9 413 85.7
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.7e-158 563.1 412 80.1
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 6.4e-158 561.2 411 79.1
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 1.9e-157 559.7 416 81.5
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 2.6e-151 539.3 408 79.4
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 1.3e-134 483.8 413 70.7
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 9.7e-106 387.9 410 55.1
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 9.1e-104 381.3 417 54.4
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 2.0e-103 380.2 416 56.2
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 7.7e-103 378.3 414 56.8
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 1.3e-102 377.5 407 54.8
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 2.2e-102 376.7 410 52.4
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.2e-102 376.7 407 54.8
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.9e-102 376.3 410 52.4
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 5.0e-102 375.6 407 54.3
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 5.0e-102 375.6 409 53.5
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 8.5e-102 374.8 410 52.2
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 1.5e-101 374.0 280 87.9
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 7.2e-101 371.7 410 54.1
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 9.4e-101 371.3 411 52.3
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 3.6e-100 369.4 412 52.4
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 6.8e-99 365.2 412 53.9
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.0e-98 363.6 411 53.3
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 1.3e-97 360.9 418 52.2
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 1.7e-97 360.5 418 51.4
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 6.3e-97 358.6 405 51.6
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 8.3e-97 358.2 409 52.1
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.4e-96 357.5 412 51.5
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 5.3e-96 355.5 419 50.8
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 9.1e-96 354.8 414 51.4
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 3.5e-95 352.8 414 51.0
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 4.5e-95 352.4 414 51.0
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 4.5e-95 352.4 407 50.9
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 5.9e-95 352.1 408 51.5
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 5.9e-95 352.1 413 50.4
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 1.7e-94 350.5 410 50.5
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 1.7e-94 350.5 410 50.2
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 1.7e-94 350.5 415 50.6
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 2.9e-94 349.7 415 51.3
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 3.8e-94 349.4 411 56.4
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 6.5e-94 348.6 415 49.6
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 8.5e-94 348.2 410 53.4
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 8.5e-94 348.2 419 50.1
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 1.1e-93 347.8 449 46.8
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 2.5e-93 346.7 411 49.6
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 4.2e-93 345.9 415 50.1
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 7.2e-93 345.1 410 50.5
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 9.4e-93 344.7 416 50.7
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.6e-92 344.0 411 49.1
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 1.6e-92 344.0 408 53.9
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 2.1e-92 343.6 408 50.7
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 2.7e-92 343.2 420 48.3
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 3.6e-92 342.8 415 49.9
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 1.0e-91 341.3 411 49.4
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 2.3e-91 340.1 411 49.4
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 4.0e-91 339.3 414 49.3
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 4.0e-91 339.3 418 53.8
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 6.8e-91 338.6 413 49.9
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 6.8e-91 338.6 413 50.4
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 1.2e-90 337.8 410 49.0
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 3.4e-90 336.3 415 50.1
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 5.7e-90 335.5 411 48.7
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 7.5e-90 335.1 415 50.1
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.3e-89 334.3 418 49.0
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 3.7e-89 332.8 417 49.6
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 4.8e-89 332.4 423 48.9
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 8.3e-89 331.6 425 46.4
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 1.1e-88 331.3 412 49.0
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.4e-88 330.9 420 48.3
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 1.4e-88 330.9 412 50.5
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 3.1e-88 329.7 414 48.8
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 1.6e-87 327.4 413 48.7
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 1.6e-87 327.4 433 48.0
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 4.5e-87 325.9 414 49.5
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 1.3e-86 324.3 420 48.6
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 6.6e-86 322.0 411 47.4
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 1.1e-85 321.2 417 53.0
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 1.1e-85 321.2 414 47.8
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 1.9e-85 320.5 416 52.2
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 5.5e-85 318.9 429 47.6
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 9.5e-85 318.2 419 51.6
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 1.6e-84 317.4 410 47.1
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 4.7e-84 315.8 413 48.4
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.4e-83 314.3 414 47.6
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 1.8e-83 313.9 412 48.8
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 2.3e-83 313.5 400 48.2
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.2e-82 311.2 408 48.0
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 1.3e-81 307.8 437 45.5
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 4.9e-81 305.8 415 46.0
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 3.2e-80 303.1 265 59.2
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 4.1e-80 302.8 394 54.3
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 7.0e-80 302.0 395 46.6
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 1.5e-74 284.3 443 41.1
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 7.5e-74 282.0 427 42.4
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 4.9e-73 279.3 409 43.0
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 8.3e-73 278.5 280 56.8
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.6e-68 264.2 413 45.0
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 1.6e-68 264.2 412 41.5
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 6.0e-63 245.7 410 43.7
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 1.3e-62 244.6 269 51.3
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 6.2e-52 209.1 430 37.7
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 3.1e-51 206.8 211 72.0
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 3.2e-48 196.8 261 46.0
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 1.3e-46 191.4 491 34.2
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 3.2e-40 170.2 295 40.3
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 2.7e-39 167.2 552 29.9
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 3.0e-38 163.7 143 62.2
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 3.6e-36 156.8 143 57.3
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.4e-35 154.8 419 32.9
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 6.9e-35 152.5 244 39.8
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 6.9e-35 152.5 244 39.8
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 6.9e-35 152.5 244 39.8
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 3.8e-33 146.7 143 59.4
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 4.5e-26 123.2 420 30.0
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 3.8e-25 120.2 125 52.8
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 4.6e-23 113.2 303 33.3
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 3.4e-18 97.1 371 28.3
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 3.4e-18 97.1 371 28.3
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.1e-13 82.0 101 46.5
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 2.8e-12 77.4 91 48.4
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 7.7e-10 69.3 38 81.6
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 3.6e-07 60.5 77 42.9
MCO11G547 Micromonas commoda HOM05D005438 ORTHO05D006744 5.1e-06 56.6 310 24.5


User provided reference genes

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