Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 4.9e-216 755.0 655 100.0
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 7.3e-188 661.4 656 93.4
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 8.7e-173 611.3 656 90.2
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 5.8e-169 598.6 656 89.2
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 1.6e-163 580.5 660 88.6
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 1.9e-159 567.0 661 88.0
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 4.2e-159 565.8 660 88.0
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 4.2e-159 565.8 660 88.0
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 4.6e-150 535.8 665 87.1
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 2.9e-144 516.5 664 85.8
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 1.3e-139 501.1 661 84.6
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 1.4e-138 497.7 662 84.1
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 7.7e-137 491.9 661 84.1
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 1.0e-136 491.5 659 84.1
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 6.5e-136 488.8 647 83.5
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 6.7e-133 478.8 662 82.3
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 4.4e-132 476.1 662 82.2
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 5.2e-117 426.0 660 80.0
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 1.3e-104 384.8 673 75.8
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 2.0e-84 317.8 667 72.6
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 2.3e-72 277.7 655 69.2
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 3.6e-70 270.4 674 67.4
BcaC04g22535 Brassica carinata HOM05D003548 ORTHO05D004066 2.4e-69 267.7 254 66.9
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 1.7e-67 261.5 681 65.5
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 1.6e-65 255.0 670 66.6
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 2.3e-64 251.1 663 67.0
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.3e-64 251.1 673 67.5
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 5.1e-64 250.0 672 67.0
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 9.6e-63 245.7 661 67.0
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 2.8e-62 244.2 658 66.0
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 4.8e-62 243.4 661 66.9
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 5.3e-61 240.0 674 64.7
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 9.0e-61 239.2 676 65.1
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 2.0e-60 238.0 660 66.5
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 5.8e-60 236.5 665 65.6
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 9.9e-60 235.7 660 66.5
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.2e-59 234.6 670 65.1
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 2.9e-59 234.2 674 65.1
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 8.4e-59 232.6 682 64.2
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 1.6e-57 228.4 673 64.6
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 2.1e-57 228.0 668 65.9
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 4.6e-57 226.9 691 62.7
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 4.6e-57 226.9 302 50.3
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 7.9e-57 226.1 672 64.0
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 7.9e-57 226.1 670 64.5
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 1.0e-56 225.7 668 65.4
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.3e-56 225.3 670 64.6
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 5.1e-56 223.4 667 64.6
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 8.7e-56 222.6 688 64.1
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.1e-55 222.2 688 64.1
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 3.3e-55 220.7 303 51.5
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 4.3e-55 220.3 670 64.0
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 5.6e-55 219.9 673 64.6
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 1.3e-54 218.8 668 65.1
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.1e-54 218.0 693 62.5
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 2.1e-54 218.0 661 65.4
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.8e-54 217.6 668 65.0
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 3.6e-54 217.2 304 50.3
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 3.6e-54 217.2 696 62.8
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 6.9e-53 213.0 699 61.8
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 6.9e-53 213.0 698 61.3
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 9.0e-53 212.6 674 63.8
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 2.0e-52 211.5 677 63.7
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 2.0e-52 211.5 672 64.0
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 3.4e-52 210.7 668 64.5
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 4.5e-52 210.3 674 63.9
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 7.6e-52 209.5 302 50.3
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 1.3e-51 208.8 664 64.8
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 2.2e-51 208.0 669 65.0
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 3.8e-51 207.2 674 62.6
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.4e-50 205.3 696 61.2
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 1.4e-50 205.3 669 64.4
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 2.4e-50 204.5 677 62.6
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 3.2e-50 204.1 297 48.8
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 2.1e-49 201.4 674 62.6
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 2.1e-49 201.4 634 66.2
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 6.0e-49 199.9 661 63.4
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 1.5e-47 195.3 303 50.2
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 2.5e-47 194.5 658 62.6
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 1.3e-46 192.2 299 48.2
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 6.2e-46 189.9 671 62.3
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.1e-45 189.1 300 46.0
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 3.1e-45 187.6 308 46.4
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 4.0e-45 187.2 675 62.4
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 6.9e-45 186.4 661 62.0
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 1.5e-44 185.3 305 46.2
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 5.8e-44 183.3 674 61.4
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 1.7e-43 181.8 667 62.4
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 2.2e-43 181.4 300 44.7
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 4.9e-43 180.3 296 45.6
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 1.9e-42 178.3 224 58.5
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.9e-42 178.3 294 48.3
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 3.0e-40 171.0 299 44.5
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 3.9e-40 170.6 292 44.9
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 5.1e-40 170.2 669 62.0
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 1.4e-37 162.2 674 61.0
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 3.1e-37 161.0 271 42.1
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 2.0e-36 158.3 303 42.6
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 2.6e-36 157.9 294 41.8
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 5.9e-36 156.8 304 42.1
Oeu042369.1 Olea europaea HOM05D003548 ORTHO05D004066 7.6e-36 156.4 279 47.3
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 7.6e-36 156.4 302 40.4
Cpa.g.sc321.2 Carica papaya HOM05D003548 ORTHO05D004066 2.2e-35 154.8 142 64.1
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 2.9e-35 154.5 304 41.8
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 4.2e-34 150.6 294 40.8
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 9.3e-34 149.4 295 41.0
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 2.1e-33 148.3 308 40.9
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 3.6e-33 147.5 305 42.0
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 3.6e-33 147.5 305 42.0
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 5.1e-32 143.7 258 43.0
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 1.1e-31 142.5 299 42.1
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 9.7e-31 139.4 682 61.0
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.3e-30 139.0 302 43.0
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.6e-30 138.7 301 39.2
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 1.6e-30 138.7 302 39.1
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 1.6e-30 138.7 260 41.5
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.6e-30 138.7 303 40.6
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 6.3e-30 136.7 675 57.6
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 6.3e-30 136.7 293 39.2
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.1e-29 136.0 294 40.1
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 3.1e-29 134.4 649 56.4
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 4.1e-29 134.0 300 38.7
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 1.5e-28 132.1 293 37.9
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 3.4e-28 131.0 292 41.1
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.0e-27 129.4 307 37.8
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 2.2e-27 128.3 305 39.3
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 2.2e-27 128.3 261 39.8
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 5.0e-27 127.1 661 58.7
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 5.0e-27 127.1 297 38.7
GSVIVG01003094001 Vitis vinifera HOM05D003548 ORTHO05D004066 1.6e-25 122.1 156 50.6
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 3.6e-25 120.9 682 56.9
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 3.6e-25 120.9 300 38.0
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 2.3e-24 118.2 307 37.5
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 5.1e-24 117.1 308 36.4
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 9.7e-23 112.8 215 39.5
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.7e-22 112.1 301 35.5
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 1.7e-22 112.1 291 36.1
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 2.2e-22 111.7 266 37.6
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 2.8e-22 111.3 303 37.6
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.7e-22 110.9 294 37.1
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.7e-22 110.9 294 37.1
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 6.3e-22 110.2 272 36.4
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 1.2e-20 105.9 262 38.5
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 1.5e-20 105.5 267 37.1
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 7.7e-20 103.2 260 37.3
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 2.2e-19 101.7 284 34.2
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 6.5e-19 100.1 139 48.2
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 1.1e-18 99.4 264 36.7
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 2.5e-18 98.2 245 33.5
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 3.6e-17 94.4 291 33.7
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 6.1e-17 93.6 281 31.3
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 6.1e-17 93.6 247 35.2
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 1.0e-16 92.8 670 57.2
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 1.8e-16 92.0 299 30.8
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 1.8e-16 92.0 225 39.1
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 8.8e-16 89.7 247 34.8
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 2.0e-15 88.6 305 33.1
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 2.6e-15 88.2 260 35.4
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 7.4e-15 86.7 291 32.3
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 7.4e-15 86.7 265 34.0
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 9.7e-15 86.3 283 32.5
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 2.8e-14 84.7 264 33.3
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.8e-14 84.7 222 38.3
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 8.2e-14 83.2 282 34.8
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 1.4e-13 82.4 286 32.9
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 4.1e-13 80.9 185 37.8
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 5.3e-13 80.5 247 31.2
CDE02G2034 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 5.9e-12 77.0 294 33.7
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 5.9e-12 77.0 555 48.6
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 5.9e-12 77.0 259 35.9
AT4G12020 Arabidopsis thaliana HOM05D000005 ORTHO05D012037 7.7e-12 76.6 99 50.5
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 7.7e-12 76.6 254 34.3
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 2.2e-11 75.1 138 37.0
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 2.2e-11 75.1 141 38.3
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.8e-11 74.3 513 65.3
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 3.8e-11 74.3 233 33.0
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 6.5e-11 73.6 282 31.2
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 4.2e-10 70.9 268 31.3
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 1.2e-09 69.3 240 30.0
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 4.7e-09 67.4 144 41.7
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.4e-08 65.9 223 29.6
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 1.8e-08 65.5 135 37.0
Nitab4.5_0001748g0030 Nicotiana tabacum HOM05D003548 ORTHO05D004066 6.7e-08 63.5 253 30.4
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 9.7e-07 59.7 234 31.2
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 1.7e-06 58.9 261 31.4
ATR1131G034 Amborella trichopoda HOM05D003548 ORTHO05D004066 2.2e-06 58.5 145 38.6


User provided reference genes

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