Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.9e-135 485.3 263 100.0
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 5.1e-100 368.2 264 79.9
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 8.5e-95 350.9 260 75.8
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 4.2e-94 348.6 261 77.4
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 2.3e-92 342.8 265 76.2
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 3.0e-92 342.4 262 75.6
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 2.4e-89 332.8 248 77.0
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.6e-85 320.1 250 74.8
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.0e-76 289.3 269 69.1
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.2e-66 256.5 264 65.2
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.8e-65 253.4 267 63.3
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 1.6e-37 160.6 294 46.3
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 1.6e-37 160.6 294 46.3
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 4.0e-36 156.0 296 44.3
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.5e-35 154.1 296 43.9
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 2.0e-35 153.7 294 45.2
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.4e-33 147.5 283 44.5
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.2e-33 146.4 293 41.6
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 3.2e-33 146.4 299 42.8
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 9.2e-33 144.8 295 42.7
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 3.9e-31 139.4 296 42.2
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 6.2e-29 132.1 209 46.9
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 3.1e-28 129.8 155 56.1
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 4.0e-28 129.4 326 36.8
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.4e-25 119.0 160 53.1
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 5.4e-25 119.0 160 53.1
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.1e-24 117.1 156 52.6
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 6.0e-24 115.5 148 50.0
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.7e-23 114.0 148 51.4
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.7e-23 114.0 148 51.4
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 3.0e-23 113.2 153 52.3
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 6.6e-23 112.1 176 44.9
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.5e-22 110.9 150 49.3
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.5e-22 110.9 140 50.0
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 2.5e-22 110.2 159 46.5
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 4.3e-22 109.4 178 48.3
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 5.6e-22 109.0 181 45.3
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.6e-21 107.5 131 52.7
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 2.1e-21 107.1 154 49.4
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 4.8e-21 105.9 162 46.3
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 4.8e-21 105.9 162 46.3
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 4.8e-21 105.9 165 44.2
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.4e-20 104.4 158 45.6
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.8e-20 104.0 156 48.7
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.1e-20 103.2 153 47.1
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.0e-20 102.8 153 47.1
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 5.3e-20 102.4 161 41.6
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 9.0e-20 101.7 151 45.0
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 9.0e-20 101.7 156 43.6
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 2.0e-19 100.5 155 42.6
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 2.0e-19 100.5 155 42.6
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.0e-19 100.5 177 44.1
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 4.5e-19 99.4 143 46.9
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 4.5e-19 99.4 174 40.2
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 5.8e-19 99.0 181 43.1
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 7.6e-19 98.6 145 46.2
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 1.7e-18 97.4 180 43.3
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 2.2e-18 97.1 161 43.5
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 2.9e-18 96.7 210 36.7
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 3.8e-18 96.3 168 43.5
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 8.4e-18 95.1 137 48.9
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 1.4e-17 94.4 166 41.6
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 2.4e-17 93.6 154 42.2
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 2.4e-17 93.6 187 42.2
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 4.2e-17 92.8 155 41.9
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 5.4e-17 92.4 168 41.1
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 5.4e-17 92.4 163 41.1
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 7.1e-17 92.0 157 42.7
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.6e-16 90.9 230 38.7
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 2.1e-16 90.5 148 45.3
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 2.1e-16 90.5 195 40.0
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 2.7e-16 90.1 164 42.1
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.5e-16 89.7 155 44.5
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 3.5e-16 89.7 245 35.1
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 4.6e-16 89.4 154 42.2
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.0e-15 88.2 171 37.4
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.3e-15 87.8 161 42.2
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.3e-15 87.8 161 42.2
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-15 87.4 144 41.0
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 1.8e-15 87.4 167 42.5
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 3.0e-15 86.7 158 41.8
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 3.0e-15 86.7 162 41.4
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 5.1e-15 85.9 159 39.6
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 6.7e-15 85.5 147 42.2
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 6.7e-15 85.5 173 38.2
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 6.7e-15 85.5 179 36.9
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 8.7e-15 85.1 157 38.2
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 1.1e-14 84.7 154 42.2
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.9e-14 84.0 198 38.4
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 1.9e-14 84.0 176 36.9
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.9e-14 84.0 173 39.3
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.9e-14 84.0 171 40.4
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 3.3e-14 83.2 169 40.2
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 3.3e-14 83.2 177 38.4
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 4.3e-14 82.8 166 36.1
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 7.4e-14 82.0 151 41.1
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.6e-13 80.9 178 38.2
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.8e-13 79.3 172 38.4
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 6.2e-13 79.0 209 36.4
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 8.1e-13 78.6 173 37.6
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 1.1e-12 78.2 192 37.5
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.4e-12 77.8 165 38.2
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.8e-12 77.4 156 39.1
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.8e-12 77.4 183 34.4
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 2.4e-12 77.0 166 36.1
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 2.4e-12 77.0 163 37.4
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 2.4e-12 77.0 190 34.2
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 3.1e-12 76.6 144 41.0
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 4.0e-12 76.3 154 38.3
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 9.0e-12 75.1 177 39.0
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 2.6e-11 73.6 200 36.5
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.5e-11 72.8 250 31.6
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.5e-11 72.8 250 31.6
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 7.6e-11 72.0 157 38.9
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 2.9e-10 70.1 155 37.4
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.1e-09 68.2 160 35.6
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 1.9e-09 67.4 109 42.2
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 2.4e-09 67.0 132 39.4
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 4.2e-09 66.2 150 40.7
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 5.5e-09 65.9 151 39.7
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 5.5e-09 65.9 109 41.3
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 5.5e-09 65.9 151 35.1
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-08 64.7 118 44.9
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 4.6e-08 62.8 106 41.5
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 4.6e-08 62.8 97 42.3
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 6.0e-08 62.4 72 54.2
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.0e-07 61.6 83 48.2
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 1.8e-07 60.8 133 42.9
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.3e-07 60.5 139 39.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 3.9e-07 59.7 87 44.8
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 8.7e-07 58.5 101 42.6
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 8.7e-07 58.5 90 48.9
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-06 58.2 123 39.0
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.1e-06 58.2 123 39.0
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.9e-06 57.4 127 38.6
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.3e-06 56.2 127 38.6
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 9.6e-06 55.1 90 43.3
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 9.6e-06 55.1 90 43.3
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 9.6e-06 55.1 90 43.3


User provided reference genes

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