Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 5.6e-104 380.9 193 100.0
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 1.4e-86 323.2 196 88.8
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 9.7e-80 300.4 181 86.7
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 4.8e-79 298.1 199 82.9
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 2.9e-76 288.9 201 79.1
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 1.0e-73 280.4 181 83.4
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 1.0e-73 280.4 181 82.9
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 1.5e-72 276.6 199 76.4
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 8.2e-71 270.8 181 80.7
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 3.8e-68 261.9 191 77.5
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.1e-62 243.8 203 69.5
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 1.3e-60 236.9 197 67.5
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 6.3e-55 218.0 132 84.8
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 2.6e-53 212.6 180 68.3
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.0e-52 210.7 182 63.7
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 1.7e-52 209.9 186 63.4
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 1.7e-52 209.9 144 76.4
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 2.9e-52 209.1 148 74.3
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 3.8e-52 208.8 170 71.8
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 8.5e-52 207.6 137 76.6
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 1.1e-51 207.2 178 64.6
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.5e-51 206.1 124 85.5
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 2.5e-51 206.1 175 64.6
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 2.5e-51 206.1 149 75.8
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 2.5e-51 206.1 127 81.9
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 3.2e-51 205.7 186 62.4
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 3.2e-51 205.7 132 78.8
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 3.2e-51 205.7 182 62.6
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 4.2e-51 205.3 132 80.3
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 5.5e-51 204.9 140 76.4
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 7.2e-51 204.5 145 75.2
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 7.2e-51 204.5 140 75.7
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 9.4e-51 204.1 134 79.9
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 9.4e-51 204.1 125 81.6
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 1.6e-50 203.4 137 75.2
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.7e-50 202.6 125 80.8
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 2.7e-50 202.6 189 62.4
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 3.6e-50 202.2 144 73.6
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 4.7e-50 201.8 179 65.4
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 4.7e-50 201.8 163 68.1
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 6.1e-50 201.4 173 64.2
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 8.0e-50 201.1 136 77.9
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 8.0e-50 201.1 191 61.8
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 1.4e-49 200.3 149 71.8
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 1.4e-49 200.3 171 65.5
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 1.8e-49 199.9 121 84.3
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 1.8e-49 199.9 142 75.4
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 2.3e-49 199.5 119 84.9
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 2.3e-49 199.5 174 65.5
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 2.3e-49 199.5 171 64.9
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 3.0e-49 199.1 142 74.6
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 3.0e-49 199.1 171 64.9
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 4.0e-49 198.7 175 65.7
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 4.0e-49 198.7 127 79.5
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 5.2e-49 198.4 130 78.5
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 6.8e-49 198.0 158 67.7
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 6.8e-49 198.0 128 80.5
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 6.8e-49 198.0 177 61.0
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 8.8e-49 197.6 125 78.4
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 1.5e-48 196.8 126 81.0
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 2.6e-48 196.1 147 72.1
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 9.7e-48 194.1 147 71.4
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 9.7e-48 194.1 136 73.5
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 9.7e-48 194.1 159 64.2
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 9.7e-48 194.1 127 76.4
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 1.3e-47 193.7 185 58.9
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 1.7e-47 193.4 131 77.9
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 1.7e-47 193.4 129 77.5
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 2.2e-47 193.0 147 70.1
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 3.7e-47 192.2 157 65.0
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 3.7e-47 192.2 125 77.6
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 4.8e-47 191.8 141 73.0
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 6.3e-47 191.4 126 77.8
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 6.3e-47 191.4 212 54.7
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 8.3e-47 191.0 127 75.6
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 2.4e-46 189.5 171 63.7
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.4e-46 189.5 118 80.5
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 4.1e-46 188.7 121 80.2
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 4.1e-46 188.7 129 76.0
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 5.3e-46 188.3 181 60.2
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 5.3e-46 188.3 147 70.7
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 9.1e-46 187.6 171 62.0
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.2e-45 187.2 191 57.1
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.2e-45 187.2 190 56.3
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.0e-45 186.4 145 69.0
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.0e-45 186.4 145 69.0
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.5e-45 185.7 190 56.3
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 4.5e-45 185.3 191 57.1
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 5.9e-45 184.9 118 77.1
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 5.9e-45 184.9 158 62.7
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.2e-44 183.0 191 56.5
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 6.5e-44 181.4 112 79.5
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 8.5e-44 181.0 165 60.6
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 4.2e-43 178.7 157 63.1
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 5.5e-43 178.3 120 75.8
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 7.2e-43 177.9 128 75.0
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 1.6e-42 176.8 159 63.5
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.6e-42 176.8 174 60.3
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.6e-42 176.8 128 74.2
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 6.1e-42 174.9 119 73.9
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 2.3e-41 172.9 126 72.2
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 2.3e-41 172.9 126 72.2
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 6.8e-41 171.4 129 70.5
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 1.7e-36 156.8 145 57.9
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 2.3e-36 156.4 126 61.9
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 1.5e-35 153.7 89 88.8
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 3.3e-35 152.5 122 70.5
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 4.2e-35 152.1 185 54.6
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 9.5e-35 151.0 146 61.6
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 4.4e-32 142.1 159 53.5
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.2e-26 124.0 80 80.0
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 2.1e-26 123.2 124 57.3
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 1.2e-24 117.5 109 63.3
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 3.4e-24 115.9 62 88.7
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.1e-22 110.9 57 93.0
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.1e-22 110.9 57 93.0
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.9e-22 110.2 59 88.1
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 3.2e-22 109.4 134 52.2
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 4.1e-22 109.0 57 91.2
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 9.2e-22 107.8 68 80.9
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 5.6e-19 98.6 90 58.9
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 3.6e-18 95.9 138 44.9
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 2.3e-17 93.2 61 75.4
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.5e-16 90.5 76 61.8
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.3e-15 87.4 102 48.0
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 2.4e-14 83.2 114 49.1
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 4.1e-14 82.4 118 40.7
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 1.3e-12 77.4 60 63.3
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 4.7e-10 68.9 61 59.0
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.3e-07 60.8 89 42.7
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 3.7e-07 59.3 85 43.5


User provided reference genes

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