Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 7.8e-115 417.2 212 100.0
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.4e-108 395.6 212 95.3
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 6.6e-106 387.5 206 95.1
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.6e-104 381.7 213 93.0
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.4e-103 379.8 212 92.5
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.3e-101 373.2 214 92.1
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-100 370.2 213 91.1
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-100 370.2 214 90.7
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.1e-100 370.2 214 90.7
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 2.4e-100 369.0 214 90.2
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 2.4e-100 369.0 214 90.2
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.4e-100 369.0 214 90.7
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 5.4e-100 367.9 213 90.6
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.6e-99 366.3 214 89.7
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 3.5e-99 365.2 212 89.6
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.0e-98 363.6 211 89.6
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.0e-98 363.6 213 89.7
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.0e-98 363.6 213 89.7
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.1e-91 339.3 200 89.0
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.3e-88 330.1 211 81.0
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 5.6e-81 304.7 214 74.3
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 2.1e-80 302.8 214 74.3
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.1e-79 298.9 214 73.8
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.6e-75 286.6 205 73.2
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.6e-75 286.6 203 73.4
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.5e-73 280.0 211 70.1
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 3.7e-72 275.4 190 72.1
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 8.1e-72 274.2 213 67.1
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.4e-71 272.7 203 69.5
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.0e-71 271.9 206 69.9
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 9.0e-71 270.8 204 69.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 2.0e-70 269.6 209 67.0
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.6e-70 269.2 203 68.0
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 5.8e-70 268.1 209 67.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.7e-69 266.5 194 71.1
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 2.2e-69 266.2 208 67.8
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.9e-69 265.8 211 66.4
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 3.8e-69 265.4 204 69.6
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.8e-69 265.4 208 68.3
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 6.5e-69 264.6 196 71.4
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.4e-69 264.2 197 70.1
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.9e-68 263.1 196 69.9
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.9e-68 263.1 204 71.1
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 9.3e-68 260.8 204 68.1
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 9.3e-68 260.8 191 72.3
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.2e-67 260.4 204 67.6
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.2e-67 260.4 212 66.5
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.2e-67 260.4 169 77.5
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 7.9e-67 257.7 188 74.5
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 7.9e-67 257.7 196 69.9
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 7.9e-67 257.7 206 68.0
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 7.9e-67 257.7 210 67.6
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 1.3e-66 256.9 195 72.3
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.3e-66 256.9 194 69.6
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.8e-66 256.5 210 66.2
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 2.3e-66 256.1 208 63.9
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 2.3e-66 256.1 206 68.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 2.3e-66 256.1 206 68.0
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.0e-66 255.8 206 67.5
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 8.7e-66 254.2 255 56.9
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.1e-65 253.8 195 71.3
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.5e-65 253.4 185 71.4
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.5e-65 253.4 213 66.7
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.5e-65 253.4 191 71.2
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.9e-65 253.1 200 67.0
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 2.5e-65 252.7 202 66.8
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.5e-65 252.7 190 68.9
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.3e-65 252.3 204 68.1
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 4.3e-65 251.9 213 65.3
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 5.7e-65 251.5 210 66.7
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.7e-65 251.5 210 66.7
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.7e-65 251.5 210 66.7
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 5.7e-65 251.5 150 82.7
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.6e-65 250.8 196 68.4
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.6e-65 250.8 196 68.4
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.3e-64 250.4 208 66.8
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.3e-64 250.4 211 67.3
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 2.1e-64 249.6 194 68.6
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.8e-64 249.2 210 64.3
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.7e-64 248.8 196 67.9
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 4.8e-64 248.4 215 63.7
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.2e-64 248.1 210 66.2
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 6.2e-64 248.1 156 78.8
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 6.2e-64 248.1 202 64.9
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.2e-64 247.7 210 65.7
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.8e-63 246.5 210 67.6
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.8e-63 246.5 210 65.7
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.4e-63 246.1 214 65.4
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 5.3e-63 245.0 157 75.8
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.0e-62 243.0 195 65.1
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.5e-62 241.9 205 63.9
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 5.0e-61 238.4 155 74.8
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 8.4e-61 237.7 205 65.4
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 5.5e-60 235.0 212 60.4
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.2e-59 233.8 204 63.2
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.2e-59 233.8 202 63.9
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 1.6e-59 233.4 151 78.1
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 2.7e-59 232.6 172 70.3
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.7e-59 232.6 195 64.6
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-58 229.9 217 59.9
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.3e-57 225.7 200 60.5
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 4.3e-57 225.3 195 62.1
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 9.7e-57 224.2 184 65.2
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 2.2e-56 223.0 163 70.6
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 6.9e-55 218.0 189 64.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 9.0e-55 217.6 213 57.3
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 7.7e-54 214.5 191 59.2
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.3e-53 213.8 185 62.7
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 3.8e-53 212.2 187 64.7
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 5.0e-53 211.8 120 84.2
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 6.5e-53 211.5 193 59.1
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.5e-53 211.5 202 60.9
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 2.5e-52 209.5 213 56.8
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 7.2e-52 208.0 191 57.6
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 6.1e-51 204.9 299 44.8
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.8e-50 203.4 211 57.8
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 8.2e-48 194.5 118 77.1
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 2.4e-47 193.0 158 62.7
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.4e-47 193.0 156 62.8
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 4.1e-47 192.2 146 67.8
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 3.8e-45 185.7 101 89.1
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.9e-44 183.3 150 67.3
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.2e-43 180.6 127 70.1
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.2e-43 180.6 213 51.6
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.6e-43 180.3 213 51.6
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.8e-42 176.8 120 71.7
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.3e-41 172.6 210 50.5
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 4.5e-38 162.2 212 47.6
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.9e-36 156.8 93 78.5
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 4.7e-35 152.1 106 66.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.0e-34 149.4 122 59.0
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 6.7e-34 148.3 130 55.4
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.5e-33 147.1 157 51.0
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 9.7e-33 144.4 112 58.9
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 2.8e-32 142.9 80 85.0
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 5.3e-31 138.7 134 51.5
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 2.2e-29 133.3 92 66.3
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-26 123.6 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-26 123.6 67 88.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.3e-24 117.5 80 71.2
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 7.7e-22 108.2 131 52.7
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 7.2e-20 101.7 144 44.4
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 6.3e-16 88.6 71 64.8
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.7e-14 83.2 50 78.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.5e-12 77.4 175 33.1
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.4e-07 60.1 38 76.3
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 4.1e-07 59.3 64 54.7


User provided reference genes

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