Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 3.5e-308 1060.8 548 100.0
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 2.2e-278 961.8 549 91.4
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 2.9e-278 961.4 550 91.3
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 3.7e-278 961.1 550 91.3
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 3.7e-278 961.1 550 91.3
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 4.9e-278 960.7 550 91.3
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 2.3e-275 951.8 556 89.7
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 1.4e-269 932.6 550 89.1
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 1.4e-269 932.6 554 87.7
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 2.7e-268 928.3 548 88.5
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 8.1e-265 916.8 594 81.3
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 1.2e-252 876.3 567 79.4
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 2.4e-232 808.9 533 75.0
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.3e-195 686.0 519 65.5
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 3.0e-195 685.6 519 67.6
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 5.2e-195 684.9 519 65.3
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.3e-193 680.2 520 68.1
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 5.3e-192 674.9 519 64.7
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 2.7e-191 672.5 517 68.9
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.6e-188 663.3 517 64.8
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 1.2e-186 657.1 518 64.1
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 9.8e-186 654.1 516 63.0
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.7e-185 653.3 518 63.7
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 6.3e-185 651.4 518 62.9
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 6.3e-185 651.4 517 64.6
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 1.4e-184 650.2 518 64.9
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 3.1e-184 649.0 522 68.6
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 3.1e-184 649.0 514 64.4
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 3.1e-184 649.0 516 64.3
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 4.1e-184 648.7 527 62.2
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 5.4e-184 648.3 522 64.6
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 7.0e-184 647.9 526 62.5
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 9.1e-184 647.5 516 65.3
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 2.0e-183 646.4 520 62.7
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 7.7e-183 644.4 519 62.4
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.0e-182 644.0 525 61.3
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 1.0e-182 644.0 523 62.0
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.3e-182 643.7 519 65.7
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 2.3e-182 642.9 523 62.7
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 5.0e-182 641.7 519 63.2
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 5.5e-181 638.3 512 61.9
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 9.5e-181 637.5 512 62.3
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 2.1e-180 636.3 522 64.6
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 2.8e-180 636.0 519 62.8
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 2.8e-180 636.0 512 61.5
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 8.0e-180 634.4 525 62.5
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 2.3e-179 632.9 521 65.1
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 5.2e-179 631.7 505 64.0
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.6e-178 629.4 525 61.9
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 2.6e-178 629.4 512 60.4
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 3.4e-178 629.0 515 61.7
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.4e-178 628.6 522 62.8
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 5.7e-178 628.2 574 57.7
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 7.5e-178 627.9 526 62.2
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 1.3e-177 627.1 513 62.6
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 1.3e-177 627.1 524 61.3
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.2e-177 626.3 522 63.4
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 2.8e-177 625.9 519 60.1
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 2.4e-176 622.9 522 63.0
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.1e-176 622.1 522 62.8
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 1.6e-175 620.2 519 59.5
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.1e-173 614.0 523 61.8
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.5e-173 613.6 522 61.7
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 8.0e-172 607.8 520 58.3
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 3.1e-171 605.9 522 59.4
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 2.6e-170 602.8 517 58.8
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 5.8e-170 601.7 517 58.2
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 5.8e-170 601.7 526 58.7
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 2.9e-169 599.4 512 58.6
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 4.9e-169 598.6 599 56.1
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.9e-168 596.7 531 58.6
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 5.0e-166 588.6 518 57.9
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 1.2e-164 583.9 517 60.2
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 7.5e-162 574.7 535 56.1
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 6.4e-161 571.6 393 71.0
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 6.4e-161 571.6 539 58.8
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 8.3e-161 571.2 529 55.4
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 2.7e-159 566.2 530 54.5
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 2.5e-157 559.7 545 57.2
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 8.9e-155 551.2 521 53.2
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 2.2e-153 546.6 509 54.4
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.0e-150 536.2 477 57.0
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 4.3e-149 532.3 481 58.8
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 5.2e-147 525.4 512 52.7
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.2e-146 524.2 553 54.2
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 8.4e-145 518.1 481 57.0
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.3e-140 504.2 363 67.8
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.4e-139 500.7 403 61.3
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 1.6e-135 487.3 529 48.6
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 2.5e-133 479.9 354 66.1
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 2.9e-121 439.9 270 87.8
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 4.2e-112 409.5 379 57.3
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.5e-105 385.2 474 50.2
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 3.2e-104 383.3 538 39.4
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 2.2e-100 370.5 277 66.8
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 1.4e-99 367.9 518 43.6
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 2.9e-97 360.1 531 39.7
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 1.0e-94 351.7 566 38.2
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.7e-89 334.3 591 38.6
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 5.0e-81 306.2 253 60.1
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 6.5e-81 305.8 500 38.2
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 7.2e-80 302.4 251 59.4
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 4.0e-78 296.6 269 55.0
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 7.0e-67 259.2 213 62.4
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 1.6e-66 258.1 273 53.5
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.9e-65 253.8 269 45.7
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 4.3e-64 250.0 185 66.5
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.8e-62 244.6 477 36.5
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 5.9e-58 229.6 220 55.9
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 4.0e-54 216.9 251 45.8
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.7e-52 210.3 503 27.8
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.2e-50 205.3 219 52.1
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 2.3e-41 174.5 189 49.2
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 9.5e-40 169.1 162 51.2
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.6e-39 168.3 180 53.9
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 1.1e-38 165.6 333 35.4
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 5.2e-38 163.3 258 42.6
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 8.6e-33 146.0 523 29.4
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 7.3e-32 142.9 84 79.8
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 7.3e-32 142.9 268 36.6
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 2.1e-26 124.8 162 42.6
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 4.0e-22 110.5 68 66.2
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 5.4e-19 100.1 67 59.7
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.9e-16 91.7 108 45.4
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 2.5e-16 91.3 134 42.5
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 5.6e-16 90.1 121 43.0
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 2.8e-15 87.8 179 34.6
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 3.8e-12 77.4 52 63.5
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.1e-06 59.3 36 72.2


User provided reference genes

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