Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.2e-61 240.0 149 100.0
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 2.2e-47 192.6 152 84.2
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 2.2e-47 192.6 152 84.2
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 2.9e-47 192.2 152 84.2
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 4.9e-47 191.4 153 82.4
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 6.4e-47 191.0 154 80.5
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 8.3e-47 190.7 152 83.6
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.6e-45 186.4 150 85.3
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 3.5e-45 185.3 152 83.6
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.7e-44 183.0 157 79.6
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 6.6e-44 181.0 151 81.5
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 7.6e-32 141.0 162 67.3
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.2e-22 109.0 116 65.5
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 3.2e-22 109.0 162 56.2
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 9.3e-22 107.5 103 77.7
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 9.3e-22 107.5 103 77.7
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 1.2e-21 107.1 103 77.7
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 2.1e-21 106.3 106 62.3
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 2.7e-21 105.9 107 59.8
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 3.5e-21 105.5 125 63.2
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 4.6e-21 105.1 99 64.6
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 6.0e-21 104.8 108 64.8
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.0e-21 104.8 97 77.3
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 6.0e-21 104.8 97 74.2
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.0e-20 104.0 108 61.1
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 1.0e-20 104.0 99 64.6
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 1.0e-20 104.0 99 64.6
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 1.3e-20 103.6 90 67.8
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 1.3e-20 103.6 90 67.8
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.3e-20 103.6 139 58.3
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 1.7e-20 103.2 98 78.6
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 2.3e-20 102.8 135 57.8
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 2.3e-20 102.8 110 67.3
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.3e-20 102.8 98 79.6
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 3.0e-20 102.4 99 64.6
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 6.6e-20 101.3 100 63.0
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 6.6e-20 101.3 108 59.3
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.1e-19 100.5 99 68.7
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.9e-19 99.8 116 62.1
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 4.3e-19 98.6 102 74.5
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 5.6e-19 98.2 103 69.9
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 5.6e-19 98.2 101 72.3
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 5.6e-19 98.2 96 74.0
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 7.3e-19 97.8 103 61.2
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 9.6e-19 97.4 108 72.2
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.3e-18 97.1 128 63.3
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.1e-18 96.3 96 68.8
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.1e-18 96.3 102 72.5
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 3.6e-18 95.5 102 70.6
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 3.6e-18 95.5 115 66.1
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 4.8e-18 95.1 104 71.2
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 8.1e-18 94.4 98 72.4
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 8.1e-18 94.4 107 71.0
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.1e-17 94.0 101 70.3
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.1e-17 94.0 103 59.2
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.1e-17 94.0 109 65.1
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.4e-17 93.6 97 72.2
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.4e-17 93.6 97 72.2
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.8e-17 93.2 96 75.0
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.4e-17 92.8 106 68.9
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 3.1e-17 92.4 97 74.2
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 3.1e-17 92.4 107 65.4
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.0e-17 92.0 102 70.6
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 4.0e-17 92.0 93 76.3
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 4.0e-17 92.0 98 71.4
Aa31LG10G60 Aethionema arabicum HOM05D004577 ORTHO05D005062 5.3e-17 91.7 87 62.1
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 5.3e-17 91.7 105 66.7
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 5.3e-17 91.7 107 69.2
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 5.3e-17 91.7 98 70.4
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 6.9e-17 91.3 107 68.2
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 6.9e-17 91.3 153 54.2
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 6.9e-17 91.3 105 62.9
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 9.0e-17 90.9 96 68.8
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 9.0e-17 90.9 109 60.6
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 9.0e-17 90.9 157 48.4
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 9.0e-17 90.9 130 59.2
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 9.0e-17 90.9 100 72.0
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.2e-16 90.5 144 57.6
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.2e-16 90.5 144 57.6
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.2e-16 90.5 144 57.6
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 1.2e-16 90.5 104 67.3
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.5e-16 90.1 105 68.6
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.5e-16 90.1 102 69.6
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.5e-16 90.1 97 74.2
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 1.5e-16 90.1 97 74.2
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.5e-16 90.1 104 70.2
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 2.0e-16 89.7 101 73.3
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.0e-16 89.7 105 68.6
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 2.6e-16 89.4 112 65.2
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 2.6e-16 89.4 147 52.4
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.4e-16 89.0 99 62.6
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 3.4e-16 89.0 137 58.4
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 3.4e-16 89.0 111 68.5
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 5.8e-16 88.2 104 69.2
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 7.6e-16 87.8 98 69.4
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 7.6e-16 87.8 126 56.3
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 9.9e-16 87.4 152 55.3
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.3e-15 87.0 98 71.4
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.3e-15 87.0 98 64.3
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.3e-15 87.0 102 62.7
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.2e-15 86.3 101 68.3
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 2.2e-15 86.3 106 64.2
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 2.9e-15 85.9 135 60.0
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 2.9e-15 85.9 104 63.5
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 4.9e-15 85.1 109 64.2
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 1.1e-14 84.0 105 67.6
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 1.1e-14 84.0 105 67.6
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.1e-14 84.0 107 65.4
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 1.9e-14 83.2 99 68.7
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 2.4e-14 82.8 123 53.7
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 2.4e-14 82.8 92 73.9
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.2e-14 82.4 168 48.2
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 4.2e-14 82.0 89 69.7
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.4e-14 81.6 119 53.8
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 9.3e-14 80.9 167 46.1
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 9.3e-14 80.9 109 52.3
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.2e-13 80.5 104 58.7
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 1.6e-13 80.1 168 47.0
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 2.7e-13 79.3 102 67.6
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 3.5e-13 79.0 67 77.6
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.6e-13 78.6 168 47.0
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 4.6e-13 78.6 59 69.5
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 1.3e-12 77.0 135 54.1
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 1.8e-12 76.6 141 53.2
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.8e-12 76.6 127 50.4
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 2.3e-12 76.3 125 52.0
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 6.7e-12 74.7 87 60.9
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 6.7e-12 74.7 119 52.9
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.5e-11 72.8 86 52.3
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.6e-11 71.6 168 45.8
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.6e-11 71.6 121 57.9
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 5.6e-11 71.6 87 65.5
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.6e-10 70.1 88 68.2
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 3.1e-09 65.9 132 49.2
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 4.0e-09 65.5 88 55.7
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.0e-08 63.2 68 69.1
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.6e-08 62.8 65 73.8
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.5e-08 62.0 68 69.1
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 1.3e-07 60.5 100 52.0
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.2e-07 59.7 67 58.2
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.9e-07 59.3 95 54.7
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 6.4e-07 58.2 89 52.8
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.1e-06 57.4 99 49.5
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.9e-06 56.6 101 47.5
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.2e-06 55.8 67 61.2
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 4.2e-06 55.5 87 58.6
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 7.1e-06 54.7 84 63.1
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 9.3e-06 54.3 95 57.9


User provided reference genes

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