Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 1.2e-144 516.5 269 100.0
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 1.6e-85 320.1 258 70.2
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 8.4e-82 307.8 266 64.3
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 1.0e-79 300.8 262 63.7
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 9.6e-78 294.3 267 63.7
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 2.8e-77 292.7 269 66.2
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 6.3e-77 291.6 270 64.8
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 1.8e-76 290.0 269 65.4
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 9.0e-76 287.7 269 65.8
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 9.0e-76 287.7 269 65.8
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 2.5e-73 279.6 270 63.3
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 1.4e-68 263.8 261 60.2
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 1.1e-49 201.1 289 47.1
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 9.4e-41 171.4 276 42.4
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 3.6e-24 116.3 295 31.9
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 4.7e-24 115.9 107 50.5
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.0e-23 114.8 318 31.1
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 9.8e-22 108.2 87 55.2
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 9.8e-22 108.2 96 53.1
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 2.9e-21 106.7 117 47.9
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 2.9e-21 106.7 85 55.3
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.9e-21 105.9 100 48.0
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 6.4e-21 105.5 171 39.8
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.4e-20 104.4 311 28.9
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 1.4e-20 104.4 85 56.5
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 1.8e-20 104.0 87 55.2
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 2.4e-20 103.6 87 51.7
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 3.2e-20 103.2 306 28.8
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.2e-20 103.2 98 50.0
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 4.1e-20 102.8 85 55.3
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 4.1e-20 102.8 234 31.2
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 9.2e-20 101.7 107 49.5
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 2.7e-19 100.1 309 28.8
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 2.7e-19 100.1 93 46.2
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 3.5e-19 99.8 156 37.8
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 3.5e-19 99.8 107 42.1
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 4.6e-19 99.4 121 42.1
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 7.8e-19 98.6 111 43.2
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 1.0e-18 98.2 99 46.5
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 1.7e-18 97.4 84 54.8
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 3.9e-18 96.3 87 48.3
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 3.9e-18 96.3 264 29.5
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 6.6e-18 95.5 85 51.8
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 8.6e-18 95.1 80 50.0
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 1.1e-17 94.7 119 39.5
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 1.1e-17 94.7 129 41.1
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.5e-17 94.4 81 51.9
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 1.5e-17 94.4 95 45.3
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 1.9e-17 94.0 171 33.9
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 2.5e-17 93.6 96 46.9
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 4.3e-17 92.8 95 45.3
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.2e-16 91.3 268 28.4
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 6.2e-16 89.0 252 29.8
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.1e-15 88.2 115 38.3
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 3.1e-15 86.7 269 28.3
Duzib213G0291 Durio zibethinus HOM05D005863 ORTHO05D003355 5.2e-15 85.9 270 30.4
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 5.2e-15 85.9 83 45.8
FAN23G2175 Fragaria x ananassa HOM05D014719 ORTHO05D003355 1.2e-14 84.7 119 37.8
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 2.0e-14 84.0 95 43.2
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 2.6e-14 83.6 84 44.0
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 3.4e-14 83.2 287 29.6
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 9.8e-14 81.6 306 28.8
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.3e-13 81.3 100 41.0
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 1.7e-13 80.9 97 41.2
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 1.7e-13 80.9 91 40.7
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 1.7e-13 80.9 131 35.1
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 2.2e-13 80.5 95 42.1
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 2.2e-13 80.5 131 33.6
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 2.9e-13 80.1 82 46.3
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 3.7e-13 79.7 89 40.4
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 6.4e-13 79.0 93 36.6
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 8.3e-13 78.6 122 35.2
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.1e-12 78.2 104 37.5
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.1e-12 78.2 86 40.7
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.4e-12 77.8 90 40.0
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.4e-12 77.8 234 26.9
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 1.9e-12 77.4 100 37.0
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 1.9e-12 77.4 88 37.5
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 2.4e-12 77.0 80 40.0
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.4e-12 77.0 86 40.7
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 3.2e-12 76.6 122 34.4
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 7.0e-12 75.5 83 41.0
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 9.2e-12 75.1 142 31.7
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.6e-11 74.3 80 41.2
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.6e-11 74.3 132 33.3
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.7e-11 73.6 86 38.4
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 2.7e-11 73.6 89 33.7
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 2.7e-11 73.6 86 40.7
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 3.5e-11 73.2 100 36.0
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 3.5e-11 73.2 82 40.2
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.5e-11 73.2 80 42.5
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 4.6e-11 72.8 90 36.7
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.6e-11 72.8 81 42.0
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 6.0e-11 72.4 139 30.9
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.0e-10 71.6 156 31.4
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.3e-10 71.2 90 37.8
Ca_02000_v3 Cicer arietinum L. HOM05D005863 ORTHO05D003355 2.3e-10 70.5 234 27.4
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 2.3e-10 70.5 109 34.9
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 2.3e-10 70.5 84 34.5
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 2.3e-10 70.5 89 37.1
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 3.0e-10 70.1 150 31.3
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 3.9e-10 69.7 112 31.2
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 3.9e-10 69.7 90 36.7
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 3.9e-10 69.7 113 34.5
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 5.0e-10 69.3 166 30.1
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 5.0e-10 69.3 86 36.0
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 5.0e-10 69.3 83 41.0
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 5.0e-10 69.3 81 34.6
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 6.6e-10 68.9 142 28.2
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 6.6e-10 68.9 83 37.3
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 6.6e-10 68.9 89 34.8
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 8.6e-10 68.6 111 34.2
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.1e-09 68.2 80 38.8
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 1.1e-09 68.2 207 24.6
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.5e-09 67.8 88 36.4
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 1.5e-09 67.8 86 37.2
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 1.5e-09 67.8 86 33.7
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.9e-09 67.4 118 37.3
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 1.9e-09 67.4 86 34.9
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.5e-09 67.0 88 36.4
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 2.5e-09 67.0 90 34.4
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 2.5e-09 67.0 81 34.6
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 3.3e-09 66.6 81 39.5
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 3.3e-09 66.6 118 35.6
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 3.3e-09 66.6 81 35.8
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 4.3e-09 66.2 118 36.4
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 4.3e-09 66.2 118 36.4
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 5.6e-09 65.9 84 36.9
FAN26G0704 Fragaria x ananassa HOM05D014719 ORTHO05D003355 5.6e-09 65.9 95 34.7
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 5.6e-09 65.9 133 27.1
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 5.6e-09 65.9 128 28.9
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 7.3e-09 65.5 88 36.4
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 7.3e-09 65.5 120 29.2
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 7.3e-09 65.5 94 37.2
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 9.5e-09 65.1 80 38.8
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 9.5e-09 65.1 118 36.4
FAN19G1520 Fragaria x ananassa HOM05D014719 ORTHO05D003355 1.2e-08 64.7 119 32.8
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.2e-08 64.7 81 34.6
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 1.6e-08 64.3 81 33.3
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 2.1e-08 63.9 118 35.6
FAN28G3008 Fragaria x ananassa HOM05D014719 ORTHO05D003355 2.1e-08 63.9 93 36.6
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 2.8e-08 63.5 98 37.8
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.8e-08 63.5 81 34.6
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.6e-08 63.2 81 30.9
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 6.2e-08 62.4 104 32.7
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 6.2e-08 62.4 97 34.0
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.1e-07 61.6 84 35.7
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.4e-07 61.2 195 25.6
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 2.3e-07 60.5 94 34.0
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 3.1e-07 60.1 268 27.6
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 4.0e-07 59.7 97 33.0
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 4.0e-07 59.7 212 26.9
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.2e-07 59.3 118 29.7
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 5.2e-07 59.3 101 32.7
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.2e-06 58.2 68 41.2
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 3.4e-06 56.6 61 39.3
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.8e-06 55.8 123 30.1
Zm00001eb165220 Zea mays HOM05D005863 ORTHO05D003355 5.8e-06 55.8 71 36.6
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.9e-06 55.1 249 25.7
ECA236G3808 Erigeron canadensis HOM05D000747 ORTHO05D001683 9.9e-06 55.1 148 25.7


User provided reference genes

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