Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g41390 Schrenkiella parvula HOM05D010589 ORTHO05D001927 1.0e-218 763.1 384 100.0
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 3.0e-141 505.8 385 70.6
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 3.0e-141 505.8 385 70.6
Thhalv10009755m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 2.0e-140 503.1 399 66.9
A06p10830 Brassica napus HOM05D010589 ORTHO05D001927 7.9e-134 481.1 396 65.2
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 1.8e-133 479.9 401 65.8
AL1G26800 Arabidopsis lyrata HOM05D010589 ORTHO05D001927 6.7e-133 478.0 412 62.4
BraA06t24261Z Brassica rapa HOM05D010589 ORTHO05D001927 4.4e-132 475.3 404 63.4
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 1.4e-130 470.3 400 63.8
C05p12720 Brassica napus HOM05D010589 ORTHO05D001927 1.3e-128 463.8 390 64.4
AT1G14770 Arabidopsis thaliana HOM05D010589 ORTHO05D001927 5.2e-125 451.8 431 60.1
Sp1g13210 Schrenkiella parvula HOM05D010589 ORTHO05D001927 7.5e-124 448.0 390 62.6
BcaB02g06547 Brassica carinata HOM05D010589 ORTHO05D001927 6.3e-123 444.9 396 61.4
Carub.0001s1457 Capsella rubella HOM05D010589 ORTHO05D001927 7.7e-121 438.0 414 61.1
CARHR015310 Cardamine hirsuta HOM05D010589 ORTHO05D001927 2.5e-119 433.0 389 60.4
Thhalv10011681m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 1.7e-115 420.2 332 67.2
BcaC07g40425 Brassica carinata HOM05D010589 ORTHO05D001927 3.8e-112 409.1 388 60.3
BcaC05g25396 Brassica carinata HOM05D010589 ORTHO05D001927 1.2e-110 404.1 357 61.6
Aa31LG1G320 Aethionema arabicum HOM05D010589 ORTHO05D001927 3.4e-92 342.8 396 49.0
BcaB01g06386 Brassica carinata HOM05D010589 ORTHO05D001927 1.9e-74 283.9 257 65.0
THA.LOC104805090 Tarenaya hassleriana HOM05D010589 ORTHO05D001927 3.0e-72 276.6 451 40.8
BcaC07g40429 Brassica carinata HOM05D010589 ORTHO05D001927 8.5e-35 152.1 92 83.7
BcaB03g15137 Brassica carinata HOM05D002477 ORTHO05D001927 1.1e-31 141.7 374 30.5
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 3.7e-30 136.7 365 28.5
A07p34530 Brassica napus HOM05D002477 ORTHO05D001927 2.4e-29 134.0 358 29.3
Thhalv10019541m.g Eutrema salsugineum HOM05D002477 ORTHO05D001927 2.4e-29 134.0 355 29.6
Sp5g23040 Schrenkiella parvula HOM05D002477 ORTHO05D001927 4.1e-29 133.3 384 29.7
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 3.4e-28 130.2 359 29.5
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 7.7e-28 129.0 349 29.2
Aa31LG10G8430 Aethionema arabicum HOM05D002477 ORTHO05D001927 1.4e-26 124.8 356 27.8
AL2G26890 Arabidopsis lyrata HOM05D002477 ORTHO05D001927 1.9e-26 124.4 376 27.9
BolC6t39229H Brassica oleracea HOM05D002477 ORTHO05D001927 1.9e-26 124.4 352 31.0
C06p41990 Brassica napus HOM05D002477 ORTHO05D001927 3.2e-26 123.6 393 30.5
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 4.2e-26 123.2 449 25.6
CARHR060680 Cardamine hirsuta HOM05D002477 ORTHO05D001927 9.4e-26 122.1 363 28.1
BcaC08g46229 Brassica carinata HOM05D002477 ORTHO05D001927 7.4e-23 112.5 351 29.6
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 1.7e-22 111.3 364 27.5
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 4.8e-22 109.8 352 27.0
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 4.8e-22 109.8 149 41.6
THA.LOC104821902 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 4.1e-21 106.7 162 39.5
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 6.9e-21 105.9 387 26.9
BcaNung05110 Brassica carinata HOM05D002477 ORTHO05D001927 4.5e-20 103.2 320 28.8
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 7.7e-20 102.4 409 25.4
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 1.0e-19 102.1 153 38.6
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 5.0e-19 99.8 485 24.1
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 5.0e-19 99.8 148 40.5
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 8.5e-19 99.0 208 34.6
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 2.5e-18 97.4 143 39.2
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 4.2e-18 96.7 478 23.4
BolC5t30016H Brassica oleracea HOM05D010589 ORTHO05D001927 7.2e-18 95.9 49 83.7
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 7.2e-18 95.9 537 22.7
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.2e-17 95.1 188 34.0
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.2e-17 95.1 476 23.7
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 1.6e-17 94.7 142 36.6
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.6e-17 94.7 150 38.7
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 2.1e-17 94.4 152 36.8
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 1.8e-16 91.3 136 37.5
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 5.2e-16 89.7 133 39.8
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 2.6e-15 87.4 500 22.8
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 3.3e-15 87.0 154 36.4
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 3.3e-15 87.0 213 32.4
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 5.7e-15 86.3 129 36.4
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 5.7e-15 86.3 383 25.8
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 9.7e-15 85.5 136 36.0
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 1.7e-14 84.7 168 32.1
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 2.8e-14 84.0 138 34.8
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 2.8e-14 84.0 130 35.4
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 6.3e-14 82.8 149 34.9
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 6.3e-14 82.8 156 34.6
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 8.2e-14 82.4 179 34.6
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 1.1e-13 82.0 162 34.6
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.4e-13 81.6 162 34.6
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.4e-13 81.6 162 34.6
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 1.4e-13 81.6 142 35.9
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.8e-13 81.3 125 36.8
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 2.4e-13 80.9 164 32.9
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 4.1e-13 80.1 131 33.6
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 5.3e-13 79.7 134 34.3
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 7.0e-13 79.3 362 25.1
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 7.0e-13 79.3 136 38.2
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 9.1e-13 79.0 149 32.9
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 9.1e-13 79.0 149 32.9
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.6e-12 78.2 164 33.5
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.6e-12 78.2 196 27.0
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 2.6e-12 77.4 178 29.2
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.6e-12 77.4 149 36.2
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 5.9e-12 76.3 165 31.5
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 7.7e-12 75.9 170 31.8
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.0e-11 75.5 158 33.5
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 1.3e-11 75.1 170 30.6
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 1.3e-11 75.1 75 46.7
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.3e-11 75.1 149 34.2
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 1.7e-11 74.7 143 35.0
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 2.9e-11 73.9 160 31.9
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 5.0e-11 73.2 134 33.6
SHI33651 Sapria himalayana HOM05D002477 ORTHO05D001927 5.0e-11 73.2 121 33.1
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 8.5e-11 72.4 136 34.6
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 1.1e-10 72.0 115 34.8
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.5e-10 71.6 136 33.8
Dinv24130 Davidia involucrata HOM05D002477 ORTHO05D001927 2.5e-10 70.9 149 28.2
Gorai.008G110900 Gossypium raimondii HOM05D002477 ORTHO05D001927 3.2e-10 70.5 344 23.0
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 3.2e-10 70.5 149 31.5
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 4.2e-10 70.1 174 29.9
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 5.5e-10 69.7 100 34.0
Medtr2g005950 Medicago truncatula HOM05D002477 ORTHO05D001927 5.5e-10 69.7 169 31.4
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 5.5e-10 69.7 83 41.0
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 5.5e-10 69.7 82 39.0
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 5.5e-10 69.7 133 33.8
arahy.Tifrunner.gnm1.ann1.62FNLU Arachis hypogaea HOM05D002477 ORTHO05D001927 7.2e-10 69.3 213 27.2
arahy.Tifrunner.gnm1.ann1.K0YCIR Arachis hypogaea HOM05D002477 ORTHO05D001927 7.2e-10 69.3 213 27.2
Cc06_g16670 Coffea canephora HOM05D002477 ORTHO05D001927 7.2e-10 69.3 151 31.1
Gohir.D12G101750 Gossypium hirsutum HOM05D002477 ORTHO05D001927 7.2e-10 69.3 343 23.3
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 7.2e-10 69.3 149 30.9
CSS0027860 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 9.4e-10 68.9 75 44.0
CSS0049780 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 9.4e-10 68.9 75 44.0
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 9.4e-10 68.9 206 30.6
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 1.2e-09 68.6 130 33.8
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 1.6e-09 68.2 75 40.0
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 1.6e-09 68.2 152 31.6
Haze_12555 Corylus avellana HOM05D002477 ORTHO05D001927 2.1e-09 67.8 158 34.2
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 2.1e-09 67.8 163 34.4
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 2.1e-09 67.8 150 30.0
TPR.G10410 Trifolium pratense HOM05D002477 ORTHO05D001927 2.1e-09 67.8 89 41.6
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 2.7e-09 67.4 92 37.0
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 4.7e-09 66.6 101 33.7
Medtr3g082160 Medicago truncatula HOM05D002477 ORTHO05D001927 4.7e-09 66.6 100 32.0
Rhsim04G0031500 Rhododendron simsii HOM05D002477 ORTHO05D001927 4.7e-09 66.6 73 42.5
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 6.1e-09 66.2 140 32.1
TWI74G0633 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 6.1e-09 66.2 100 33.0
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 8.0e-09 65.9 291 23.4
Gohir.A12G098550 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.4e-08 65.1 259 23.9
Duzib211G0533 Durio zibethinus HOM05D002477 ORTHO05D001927 1.8e-08 64.7 109 33.0
Lj5g0016725 Lotus japonicus HOM05D002477 ORTHO05D001927 1.8e-08 64.7 78 37.2
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 1.8e-08 64.7 218 28.9
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 1.8e-08 64.7 125 32.8
Eucgr.C04382 Eucalyptus grandis HOM05D002477 ORTHO05D001927 2.3e-08 64.3 138 31.2
Gohir.D11G153400 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.0e-08 63.9 71 36.6
Gorai.007G163500 Gossypium raimondii HOM05D002477 ORTHO05D001927 5.2e-08 63.2 71 36.6
Nn3g19128 Nelumbo nucifera HOM05D002477 ORTHO05D001927 5.2e-08 63.2 71 39.4
unitig_62.g23101 Utricularia gibba HOM05D002477 ORTHO05D001927 5.2e-08 63.2 76 42.1
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 6.7e-08 62.8 73 41.1
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 6.7e-08 62.8 127 32.3
vmacro09464 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 6.7e-08 62.8 96 35.4
AT4G12670 Arabidopsis thaliana HOM05D021191 ORTHO05D001927 8.8e-08 62.4 70 40.0
MSTRG.15028 Avicennia marina HOM05D002477 ORTHO05D001927 8.8e-08 62.4 73 32.9
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 8.8e-08 62.4 136 30.1
DCAR_009054 Daucus carota HOM05D002477 ORTHO05D001927 8.8e-08 62.4 81 37.0
Sp7g08980 Schrenkiella parvula HOM05D021191 ORTHO05D001927 1.2e-07 62.0 70 37.1
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 1.2e-07 62.0 288 25.3
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 1.5e-07 61.6 84 39.3
CDE02G2179 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 2.0e-07 61.2 85 40.0
THA.LOC104808828 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 2.0e-07 61.2 96 34.4
AL9U12160 Arabidopsis lyrata HOM05D021191 ORTHO05D001927 2.6e-07 60.8 70 40.0
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 2.6e-07 60.8 171 29.8
Sc21g0000360 Simmondsia chinensis HOM05D002477 ORTHO05D001927 2.6e-07 60.8 77 35.1
Carub.0007s3029 Capsella rubella HOM05D021191 ORTHO05D001927 3.3e-07 60.5 70 38.6
Gohir.A11G146700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.3e-07 60.5 71 35.2
HanXRQChr11g0329911 Helianthus annuus HOM05D002477 ORTHO05D001927 4.4e-07 60.1 80 33.8
Phvul.006G012311 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 5.7e-07 59.7 76 39.5
Psat5g110680 Pisum sativum HOM05D002477 ORTHO05D001927 7.5e-07 59.3 78 34.6
GSVIVG01030142001 Vitis vinifera HOM05D002477 ORTHO05D001927 9.7e-07 58.9 146 28.1
TPR.G23127 Trifolium pratense HOM05D002477 ORTHO05D001927 1.7e-06 58.2 114 28.1
PSO063G1512 Papaver somniferum HOM05D002477 ORTHO05D001927 3.7e-06 57.0 152 25.7
BcaC05g25588 Brassica carinata HOM05D002477 ORTHO05D001927 4.8e-06 56.6 71 32.4
C05p14440 Brassica napus HOM05D002477 ORTHO05D001927 4.8e-06 56.6 71 32.4
BolC5t30170H Brassica oleracea HOM05D002477 ORTHO05D001927 4.8e-06 56.6 86 29.1
Lalb_Chr04g0259381 Lupinus albus HOM05D002477 ORTHO05D001927 4.8e-06 56.6 74 36.5
TWI36G1687 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 4.8e-06 56.6 72 36.1
AUR62037152 Chenopodium quinoa HOM05D002477 ORTHO05D001927 6.3e-06 56.2 77 33.8
Peaxi162Scf00111g00528 Petunia axillaris HOM05D002477 ORTHO05D001927 6.3e-06 56.2 75 34.7
A06p12200 Brassica napus HOM05D002477 ORTHO05D001927 8.2e-06 55.8 61 32.8
BraA06t24388Z Brassica rapa HOM05D002477 ORTHO05D001927 8.2e-06 55.8 61 32.8
THA.LOC104815384 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 8.2e-06 55.8 78 29.5
VMungo1127G0424 Vigna mungo HOM05D002477 ORTHO05D001927 8.2e-06 55.8 115 34.8


User provided reference genes

Program Settings