Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.0e-111 406.8 211 100.0
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.6e-94 349.0 212 91.0
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 2.9e-93 345.5 212 88.7
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 8.6e-90 334.0 211 88.2
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 4.3e-89 331.6 211 86.7
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 9.5e-89 330.5 215 84.2
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.8e-87 326.2 214 84.6
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 7.6e-86 320.9 186 90.3
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 2.2e-85 319.3 211 82.5
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 2.9e-85 318.9 212 83.5
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 7.8e-83 310.8 185 85.9
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 8.1e-80 300.8 214 78.5
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 7.6e-78 294.3 158 93.7
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 9.3e-76 287.3 184 83.2
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 4.3e-73 278.5 147 93.9
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 9.6e-73 277.3 158 87.3
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 2.8e-72 275.8 146 93.8
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.9e-68 263.1 211 67.8
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 7.1e-68 261.2 215 67.4
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 2.3e-66 256.1 211 66.8
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.9e-65 253.1 215 67.4
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 4.3e-65 251.9 165 87.3
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.6e-64 250.0 180 71.7
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 8.1e-64 247.7 209 62.7
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.1e-63 247.3 211 63.0
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.1e-63 247.3 191 70.2
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 1.4e-63 246.9 215 63.7
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.8e-63 246.5 212 64.2
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 1.8e-63 246.5 216 62.0
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 6.9e-63 244.6 215 64.7
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 9.0e-63 244.2 211 64.0
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.0e-62 243.0 214 64.5
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 3.4e-62 242.3 214 61.7
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 3.4e-62 242.3 211 62.1
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 5.8e-62 241.5 214 64.0
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 7.6e-62 241.1 211 63.5
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 7.6e-62 241.1 174 70.7
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.3e-61 240.4 212 61.8
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.3e-61 240.4 212 61.8
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.7e-61 240.0 214 61.2
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 1.7e-61 240.0 212 62.7
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.2e-61 239.6 147 78.2
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 2.2e-61 239.6 147 79.6
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.9e-61 238.4 212 61.3
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.9e-61 238.4 210 62.9
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 6.4e-61 238.0 183 66.7
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 8.4e-61 237.7 212 61.8
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 8.4e-61 237.7 167 71.3
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 8.4e-61 237.7 212 61.3
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 8.4e-61 237.7 210 62.9
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.1e-60 237.3 212 62.7
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.1e-60 237.3 214 63.1
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.4e-60 236.9 147 77.6
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 3.2e-60 235.7 214 63.6
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 3.2e-60 235.7 217 61.8
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 4.2e-60 235.3 217 61.8
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 4.2e-60 235.3 205 62.9
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 5.4e-60 235.0 179 67.6
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 5.4e-60 235.0 213 61.5
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 5.4e-60 235.0 212 62.3
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 5.4e-60 235.0 145 77.9
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 7.1e-60 234.6 212 61.8
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 7.1e-60 234.6 214 61.7
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 7.1e-60 234.6 147 75.5
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 7.1e-60 234.6 146 76.0
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 9.3e-60 234.2 215 61.9
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.2e-59 233.8 214 62.1
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 2.7e-59 232.6 147 76.2
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.7e-59 232.6 147 75.5
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 3.5e-59 232.3 227 58.1
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.6e-59 231.9 211 60.2
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 6.0e-59 231.5 214 61.2
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 6.0e-59 231.5 213 61.0
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 6.0e-59 231.5 147 75.5
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 6.0e-59 231.5 147 75.5
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.0e-58 230.7 147 76.2
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.3e-58 230.3 212 59.9
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 1.8e-58 229.9 211 62.1
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.8e-58 229.9 215 61.4
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.3e-58 229.6 213 60.6
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 5.1e-58 228.4 212 60.8
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 6.7e-58 228.0 179 66.5
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 6.7e-58 228.0 179 66.5
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 6.7e-58 228.0 215 61.9
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 8.7e-58 227.6 147 73.5
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.1e-57 227.3 235 56.6
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.5e-57 226.9 212 58.5
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.9e-57 226.5 168 69.0
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.9e-57 226.5 211 59.2
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 2.5e-57 226.1 213 61.0
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 7.4e-57 224.6 150 74.0
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.3e-56 223.8 147 73.5
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 2.1e-56 223.0 215 58.1
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 2.1e-56 223.0 147 74.1
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.8e-56 221.9 147 72.1
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 6.2e-56 221.5 155 71.6
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 6.2e-56 221.5 155 71.6
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.1e-55 220.7 147 73.5
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 1.4e-55 220.3 148 72.3
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.4e-55 220.3 148 72.3
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.4e-55 220.3 147 72.8
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.4e-55 220.3 211 57.8
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 3.1e-55 219.2 143 74.1
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 5.3e-55 218.4 212 59.9
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 2.2e-53 213.0 204 56.9
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 8.4e-53 211.1 159 67.9
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.1e-52 210.7 215 55.8
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.9e-52 209.9 240 54.6
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.9e-52 209.9 213 56.8
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-52 209.9 147 71.4
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.5e-52 209.5 258 49.2
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 7.1e-52 208.0 221 55.2
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.6e-51 206.8 145 70.3
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-51 205.7 211 58.8
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 3.5e-51 205.7 148 68.9
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 4.6e-51 205.3 210 58.6
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.0e-50 204.1 221 54.3
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 2.3e-50 203.0 152 62.5
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 3.0e-50 202.6 211 57.8
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 8.7e-50 201.1 139 71.2
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-49 200.7 210 57.6
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 2.8e-48 196.1 189 54.5
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 8.2e-48 194.5 227 54.6
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 8.2e-48 194.5 227 54.6
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.1e-47 194.1 123 75.6
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.1e-47 194.1 177 62.1
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 3.1e-47 192.6 125 72.8
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 6.9e-47 191.4 209 51.2
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 9.0e-47 191.0 156 61.5
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.5e-46 190.3 152 60.5
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 7.6e-46 188.0 123 74.8
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 7.6e-46 188.0 211 54.5
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.0e-45 187.6 202 54.5
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.9e-45 186.0 179 55.9
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 6.5e-45 184.9 227 52.4
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 7.1e-44 181.4 173 59.0
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.8e-42 176.8 165 60.0
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 5.1e-42 175.3 149 57.7
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.1e-41 174.1 215 46.5
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 1.9e-41 173.3 187 52.9
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.6e-40 170.2 148 56.1
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 4.1e-39 165.6 238 47.1
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 9.0e-39 164.5 148 59.5
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-38 164.1 108 75.0
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 1.5e-38 163.7 106 74.5
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.6e-35 153.7 154 59.1
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 4.6e-35 152.1 96 72.9
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 2.2e-32 143.3 173 49.7
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.1e-31 141.0 89 75.3
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.4e-31 140.6 92 71.7
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.5e-30 137.1 82 81.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 9.4e-28 127.9 102 65.7
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 7.4e-25 118.2 183 43.7
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 6.3e-24 115.2 146 51.4
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 7.7e-22 108.2 96 52.1
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.7e-21 107.1 176 35.2
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 8.8e-18 94.7 63 69.8
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 5.7e-17 92.0 181 32.0
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.0e-13 81.3 49 79.6
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.0e-10 71.2 77 51.9
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 8.8e-10 68.2 158 31.0
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 2.2e-08 63.5 53 62.3


User provided reference genes

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