Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 8.3e-219 763.5 399 100.0
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 7.9e-185 650.6 395 85.3
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 3.8e-179 631.7 396 83.8
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 4.3e-175 618.2 400 81.8
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 6.2e-174 614.4 399 82.5
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 5.7e-167 591.3 402 81.3
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 5.7e-167 591.3 402 81.3
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 4.5e-164 581.6 403 79.7
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 2.2e-163 579.3 403 79.9
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 1.4e-162 576.6 403 79.2
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 3.5e-132 475.7 403 66.5
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 2.5e-130 469.5 298 83.9
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 5.4e-125 451.8 300 83.0
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 3.1e-96 356.3 380 53.9
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 2.6e-95 353.2 399 50.9
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 3.0e-91 339.7 399 51.1
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 1.1e-90 337.8 367 52.3
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 5.6e-90 335.5 410 51.0
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 2.8e-89 333.2 384 52.1
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 3.6e-89 332.8 377 54.4
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 1.8e-88 330.5 367 51.5
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 1.8e-88 330.5 367 51.8
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 4.0e-88 329.3 387 51.4
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 5.2e-88 328.9 408 49.5
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 5.2e-88 328.9 398 49.2
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 6.8e-88 328.6 373 52.0
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 2.0e-87 327.0 378 49.7
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 2.0e-87 327.0 390 52.1
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 9.9e-87 324.7 382 51.8
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 4.9e-86 322.4 358 54.2
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 8.4e-86 321.6 420 50.0
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 2.4e-85 320.1 415 48.7
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 4.2e-85 319.3 380 49.7
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 9.3e-85 318.2 359 53.2
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 9.3e-85 318.2 403 47.9
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 2.1e-84 317.0 419 49.4
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 4.6e-84 315.8 386 50.0
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 2.3e-83 313.5 392 50.0
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 3.0e-83 313.2 390 48.2
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 6.6e-83 312.0 390 49.2
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 8.7e-83 311.6 377 48.0
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 8.7e-83 311.6 370 49.5
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 1.1e-82 311.2 377 48.3
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 1.5e-82 310.8 363 49.0
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 1.9e-82 310.5 396 48.2
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 2.5e-82 310.1 377 49.6
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 2.5e-82 310.1 387 49.4
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 4.3e-82 309.3 365 49.9
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 2.1e-81 307.0 388 50.3
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 4.8e-81 305.8 395 45.6
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 4.8e-81 305.8 395 45.6
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 3.1e-80 303.1 356 52.8
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 3.4e-79 299.7 377 48.0
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 3.4e-79 299.7 369 47.2
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 5.8e-79 298.9 358 50.3
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 7.6e-79 298.5 363 47.7
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 9.9e-79 298.1 358 47.8
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 3.8e-78 296.2 374 50.3
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 3.8e-78 296.2 356 52.2
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 4.9e-78 295.8 376 49.2
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 8.4e-78 295.0 386 46.9
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 1.9e-77 293.9 370 49.7
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 2.4e-77 293.5 409 44.3
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 2.4e-77 293.5 354 52.0
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 3.2e-77 293.1 368 47.0
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 5.4e-77 292.4 353 51.3
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 4.6e-76 289.3 345 53.6
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 4.6e-76 289.3 355 48.5
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 6.0e-76 288.9 354 51.1
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 7.9e-76 288.5 353 51.0
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 1.3e-75 287.7 364 46.7
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 1.3e-75 287.7 381 46.5
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 2.3e-75 287.0 403 44.7
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 2.3e-75 287.0 404 44.6
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 3.0e-75 286.6 391 46.0
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 3.9e-75 286.2 377 46.2
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 5.1e-75 285.8 374 46.3
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 6.6e-75 285.4 372 45.4
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 1.3e-73 281.2 409 47.4
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 1.4e-72 277.7 323 50.2
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 1.4e-72 277.7 328 50.0
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 6.9e-72 275.4 364 45.1
C03p92600 Brassica napus HOM05D006726 ORTHO05D008328 3.4e-71 273.1 183 77.6
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 1.3e-70 271.2 326 50.6
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 6.4e-70 268.9 392 43.6
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 3.2e-69 266.5 308 48.7
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 5.5e-69 265.8 354 45.5
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 1.2e-68 264.6 359 44.8
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 1.6e-68 264.2 329 47.4
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 3.5e-68 263.1 376 45.2
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 3.1e-64 250.0 232 63.4
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 2.6e-63 246.9 368 43.5
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 6.3e-57 225.7 266 47.7
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 6.3e-57 225.7 389 40.9
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 3.4e-55 219.9 308 48.7
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 2.9e-54 216.9 385 40.3
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 1.1e-53 214.9 328 46.0
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 8.7e-51 205.3 398 39.4
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 9.7e-50 201.8 394 38.6
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 1.7e-46 191.0 399 37.6
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 2.5e-45 187.2 237 50.2
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.3e-43 180.6 235 48.5
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.3e-43 180.6 235 48.5
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.2e-36 158.3 232 42.2
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 1.4e-35 154.8 325 35.7
CSS0014249 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 8.0e-28 129.0 125 55.2
CSS0044208 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 8.0e-28 129.0 125 55.2
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 3.0e-27 127.1 175 45.7
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 3.3e-26 123.6 369 30.1
BolC3t17460H Brassica oleracea HOM05D006726 ORTHO05D008328 1.2e-23 115.2 95 62.1
CSS0045731 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 7.7e-23 112.5 119 51.3
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 6.5e-22 109.4 310 30.6
unitig_749.g13585 Utricularia gibba HOM05D006726 ORTHO05D008328 6.5e-22 109.4 135 42.2
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 9.4e-21 105.5 366 28.7
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.7e-20 104.0 231 35.5
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 3.0e-19 100.5 211 39.8
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 4.2e-13 80.1 126 42.9
Cre09.g400997 Chlamydomonas reinhardtii HOM05D006726 ORTHO05D008328 5.4e-08 63.2 335 23.3
MCO10G213 Micromonas commoda HOM05D006726 ORTHO05D008328 2.0e-07 61.2 275 25.1


User provided reference genes

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