Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 3.0e-67 259.2 236 100.0
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 1.0e-54 217.6 246 82.1
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 8.5e-54 214.5 239 75.7
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 5.5e-53 211.8 245 73.5
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 1.6e-52 210.3 239 85.8
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 3.0e-51 206.1 241 81.3
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 3.4e-50 202.6 240 90.4
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 1.3e-49 200.7 242 89.3
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 2.0e-47 193.4 237 72.6
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 6.5e-46 188.3 236 75.8
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 6.1e-44 181.8 263 67.7
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 1.5e-42 177.2 220 85.0
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 1.4e-40 170.6 223 89.7
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 1.9e-37 160.2 130 72.3
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 1.2e-34 151.0 99 83.8
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 4.4e-34 149.1 98 77.6
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 5.7e-34 148.7 98 75.5
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 7.5e-34 148.3 97 75.3
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 7.5e-34 148.3 98 73.5
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 1.7e-33 147.1 99 72.7
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 2.9e-33 146.4 96 80.2
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 2.9e-33 146.4 98 74.5
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.9e-33 146.4 98 74.5
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.7e-33 146.0 99 72.7
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.7e-33 146.0 99 71.7
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.1e-32 144.4 98 75.5
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 1.1e-32 144.4 234 53.4
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.1e-32 144.4 99 73.7
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.1e-32 144.4 95 77.9
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 1.4e-32 144.1 99 71.7
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 1.8e-32 143.7 96 76.0
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 1.8e-32 143.7 96 76.0
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 1.8e-32 143.7 96 76.0
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.8e-32 143.7 97 73.2
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.4e-32 143.3 236 49.6
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 3.2e-32 142.9 97 73.2
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 4.1e-32 142.5 93 75.3
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 5.4e-32 142.1 99 71.7
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 7.0e-32 141.7 98 72.4
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 9.2e-32 141.4 99 70.7
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 9.2e-32 141.4 99 70.7
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.2e-31 141.0 99 70.7
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.2e-31 141.0 97 71.1
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 3.5e-31 139.4 97 70.1
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 3.5e-31 139.4 98 71.4
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 4.6e-31 139.0 97 70.1
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.6e-31 139.0 99 70.7
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 4.6e-31 139.0 99 70.7
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.9e-31 138.7 99 69.7
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.9e-31 138.7 99 69.7
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 5.9e-31 138.7 112 71.4
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 5.9e-31 138.7 99 70.7
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 1.0e-30 137.9 93 75.3
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 1.0e-30 137.9 93 75.3
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.3e-30 137.5 98 70.4
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 3.0e-30 136.3 98 69.4
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 3.9e-30 136.0 101 68.3
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 5.0e-30 135.6 96 69.8
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 5.0e-30 135.6 99 66.7
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 8.6e-30 134.8 99 67.7
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 1.9e-29 133.7 234 56.4
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.9e-29 133.7 97 67.0
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 2.5e-29 133.3 232 48.3
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 4.3e-29 132.5 98 68.4
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 4.3e-29 132.5 99 67.7
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 9.5e-29 131.3 99 66.7
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 1.2e-28 131.0 234 42.3
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 1.2e-28 131.0 234 59.4
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.2e-28 131.0 234 55.1
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 2.1e-28 130.2 94 66.0
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 2.1e-28 130.2 96 67.7
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 2.8e-28 129.8 123 60.2
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 4.7e-28 129.0 96 66.7
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 6.2e-28 128.6 87 73.6
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 6.2e-28 128.6 232 48.7
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 8.0e-28 128.3 96 63.5
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 3.1e-27 126.3 93 66.7
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 5.2e-27 125.6 93 65.6
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 8.9e-27 124.8 80 86.2
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 1.2e-26 124.4 85 75.3
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 1.2e-26 124.4 93 65.6
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 1.5e-26 124.0 79 77.2
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 2.0e-26 123.6 87 69.0
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 3.4e-26 122.9 93 64.5
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 3.4e-26 122.9 94 66.0
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 5.8e-26 122.1 79 77.2
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 1.3e-25 120.9 87 69.0
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.3e-25 120.9 79 77.2
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 1.7e-25 120.6 86 68.6
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 1.7e-25 120.6 91 61.5
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 2.2e-25 120.2 80 85.0
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 4.9e-25 119.0 230 40.0
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 6.4e-25 118.6 95 58.9
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.1e-24 117.9 87 67.8
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 1.9e-24 117.1 86 66.3
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 3.9e-22 109.4 85 63.5
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 5.0e-22 109.0 100 61.0
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 1.5e-21 107.5 99 58.6
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 4.7e-20 102.4 80 62.5
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.4e-19 100.9 77 63.6
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 3.1e-19 99.8 89 59.6
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 9.8e-18 94.7 81 64.2
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 1.7e-17 94.0 93 52.7
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 1.1e-16 91.3 88 58.0
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 1.1e-16 91.3 88 58.0
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 5.4e-16 89.0 104 51.0
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 1.2e-15 87.8 95 50.5
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 1.6e-15 87.4 93 49.5
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 4.6e-15 85.9 99 51.5
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 7.8e-15 85.1 66 63.6
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.5e-13 80.9 99 51.5
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 1.5e-13 80.9 78 57.7
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 5.6e-13 79.0 89 47.2
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 2.1e-12 77.0 216 38.0
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 2.8e-12 76.6 51 72.5
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 5.2e-11 72.4 48 68.8
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 3.4e-10 69.7 70 51.4
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 1.7e-09 67.4 85 45.9
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 5.4e-08 62.4 91 36.3
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 9.2e-08 61.6 60 48.3
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 3.5e-07 59.7 85 43.5
AL1G43410 Arabidopsis lyrata HOM05D021810 ORTHO05D031415 6.0e-07 58.9 83 44.6
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 3.0e-06 56.6 39 71.8


User provided reference genes

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