Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g40630 Schrenkiella parvula HOM05D004431 ORTHO05D005053 1.5e-89 332.8 161 100.0
Thhalv10011240m.g Eutrema salsugineum HOM05D004431 ORTHO05D005053 8.4e-53 210.7 122 83.6
CARHR044540 Cardamine hirsuta HOM05D004431 ORTHO05D005053 3.9e-50 201.8 122 77.9
CARHR044560 Cardamine hirsuta HOM05D004431 ORTHO05D005053 5.6e-49 198.0 122 77.0
THA.LOC104815628 Tarenaya hassleriana HOM05D004431 ORTHO05D005053 6.9e-47 191.0 122 74.6
Sp3g12240 Schrenkiella parvula HOM05D004431 ORTHO05D005053 4.5e-46 188.3 122 75.4
Aa31LG8G1190 Aethionema arabicum HOM05D004431 ORTHO05D005053 1.3e-45 186.8 123 74.8
BcaB06g25412 Brassica carinata HOM05D004431 ORTHO05D005053 1.3e-45 186.8 123 74.0
AL3G26190 Arabidopsis lyrata HOM05D004431 ORTHO05D005053 1.1e-44 183.7 123 73.2
C01p50590 Brassica napus HOM05D004431 ORTHO05D005053 1.1e-44 183.7 125 72.0
A01p39630 Brassica napus HOM05D004431 ORTHO05D005053 7.1e-44 181.0 122 72.1
BolC1t05009H Brassica oleracea HOM05D004431 ORTHO05D005053 7.1e-44 181.0 122 72.1
BraA01t04004Z Brassica rapa HOM05D004431 ORTHO05D005053 7.1e-44 181.0 122 72.1
BcaC05g29131 Brassica carinata HOM05D004431 ORTHO05D005053 4.6e-43 178.3 123 72.4
A05p35420 Brassica napus HOM05D004431 ORTHO05D005053 4.6e-43 178.3 123 72.4
C05p53660 Brassica napus HOM05D004431 ORTHO05D005053 4.6e-43 178.3 123 72.4
BolC5t34039H Brassica oleracea HOM05D004431 ORTHO05D005053 4.6e-43 178.3 123 72.4
BraA05t22352Z Brassica rapa HOM05D004431 ORTHO05D005053 4.6e-43 178.3 123 72.4
AT3G13990 Arabidopsis thaliana HOM05D004431 ORTHO05D005053 1.0e-42 177.2 123 70.7
C03p25480 Brassica napus HOM05D004431 ORTHO05D005053 1.3e-42 176.8 123 71.5
Cpa.g.sc25.101 Carica papaya HOM05D004431 ORTHO05D005053 5.1e-42 174.9 122 72.1
C06p53980 Brassica napus HOM05D004431 ORTHO05D005053 1.1e-41 173.7 123 70.7
THA.LOC104810364 Tarenaya hassleriana HOM05D004431 ORTHO05D005053 5.6e-41 171.4 122 70.5
GSVIVG01016781001 Vitis vinifera HOM05D004431 ORTHO05D005053 2.4e-39 166.0 122 68.0
Carub.0003s1357 Capsella rubella HOM05D004431 ORTHO05D005053 1.2e-38 163.7 123 67.5
Atru.chr1.3908 Acer truncatum HOM05D004431 ORTHO05D005053 1.5e-38 163.3 122 67.2
Thecc.06G118000 Theobroma cacao HOM05D004431 ORTHO05D005053 5.8e-38 161.4 122 65.6
Manes.04G143100 Manihot esculenta HOM05D004431 ORTHO05D005053 1.0e-37 160.6 122 66.4
Duzib235G1186 Durio zibethinus HOM05D004431 ORTHO05D005053 1.3e-37 160.2 122 64.8
Hma1.2p1_0291F.1_g115210 Hydrangea macrophylla HOM05D004431 ORTHO05D005053 4.9e-37 158.3 122 66.4
MD09G1185800 Malus domestica HOM05D004431 ORTHO05D005053 6.5e-37 157.9 122 63.1
Cc04_g01450 Coffea canephora HOM05D004431 ORTHO05D005053 8.4e-37 157.5 123 65.0
Potri.003G063300 Populus trichocarpa HOM05D004431 ORTHO05D005053 8.4e-37 157.5 122 63.1
Sed0000839 Sechium edule HOM05D004431 ORTHO05D005053 8.4e-37 157.5 122 65.6
CSS0015138 Camellia sinensis var. sinensis HOM05D004431 ORTHO05D005053 3.2e-36 155.6 122 62.3
MD17G1170400 Malus domestica HOM05D004431 ORTHO05D005053 3.2e-36 155.6 122 65.6
Sabra01G0140500 Salix brachista HOM05D004431 ORTHO05D005053 3.2e-36 155.6 123 61.0
BcaB04g20964 Brassica carinata HOM05D004431 ORTHO05D005053 7.1e-36 154.5 122 65.6
ClCG07G013980 Citrullus lanatus HOM05D004431 ORTHO05D005053 7.1e-36 154.5 122 63.9
Ciclev10024871m.g Citrus clementina HOM05D004431 ORTHO05D005053 7.1e-36 154.5 122 63.9
Manes.11G021900 Manihot esculenta HOM05D004431 ORTHO05D005053 7.1e-36 154.5 122 63.1
Prupe.3G043500 Prunus persica HOM05D004431 ORTHO05D005053 7.1e-36 154.5 122 63.1
Dinv04026 Davidia involucrata HOM05D004431 ORTHO05D005053 9.3e-36 154.1 122 63.9
Rhsim12G0209100 Rhododendron simsii HOM05D004431 ORTHO05D005053 9.3e-36 154.1 119 63.9
TAR626G0841 Trochodendron aralioides HOM05D004431 ORTHO05D005053 9.3e-36 154.1 122 62.3
COL.COLO4_30777 Corchorus olitorius HOM05D004431 ORTHO05D005053 1.2e-35 153.7 119 63.0
Gohir.D10G054600 Gossypium hirsutum HOM05D004431 ORTHO05D005053 1.2e-35 153.7 122 61.5
Gorai.011G058000 Gossypium raimondii HOM05D004431 ORTHO05D005053 1.2e-35 153.7 122 61.5
Potri.001G170700 Populus trichocarpa HOM05D004431 ORTHO05D005053 1.2e-35 153.7 122 62.3
TWI31G0700 Tripterygium wilfordii HOM05D004431 ORTHO05D005053 1.2e-35 153.7 122 61.5
vmacro17052 Vaccinium macrocarpon HOM05D004431 ORTHO05D005053 1.2e-35 153.7 122 63.1
Aqoxy7G04104 Aquilegia oxysepala HOM05D004431 ORTHO05D005053 1.6e-35 153.3 122 61.5
CANSAT56G1268 Cannabis sativa HOM05D004431 ORTHO05D005053 2.7e-35 152.5 123 64.2
MELO3C025812.2 Cucumis melo HOM05D004431 ORTHO05D005053 4.6e-35 151.8 122 62.3
CsaV3_3G043560 Cucumis sativus L. HOM05D004431 ORTHO05D005053 4.6e-35 151.8 122 62.3
FvH4_6g34480 Fragaria vesca HOM05D004431 ORTHO05D005053 4.6e-35 151.8 122 63.1
FAN14G5417 Fragaria x ananassa HOM05D004431 ORTHO05D005053 4.6e-35 151.8 122 63.1
Gohir.A10G052800 Gossypium hirsutum HOM05D004431 ORTHO05D005053 6.0e-35 151.4 122 60.7
FAN09G2590 Fragaria x ananassa HOM05D004431 ORTHO05D005053 7.9e-35 151.0 123 62.6
Sed0008578 Sechium edule HOM05D004431 ORTHO05D005053 1.8e-34 149.8 122 61.5
Cfa003544 Carpinus fangiana HOM05D004431 ORTHO05D005053 2.3e-34 149.4 122 62.3
Haze_16016 Corylus avellana HOM05D004431 ORTHO05D005053 2.3e-34 149.4 122 62.3
TWI79G0584 Tripterygium wilfordii HOM05D004431 ORTHO05D005053 2.3e-34 149.4 122 59.8
FAN02G1223 Fragaria x ananassa HOM05D004431 ORTHO05D005053 3.9e-34 148.7 122 62.3
TAR383G0937 Trochodendron aralioides HOM05D004431 ORTHO05D005053 3.9e-34 148.7 122 60.7
QL05p008292 Quercus lobata HOM05D004431 ORTHO05D005053 5.1e-34 148.3 123 63.4
Duzib192G0474 Durio zibethinus HOM05D004431 ORTHO05D005053 6.7e-34 147.9 122 62.3
Actinidia26033 Actinidia chinensis HOM05D004431 ORTHO05D005053 8.7e-34 147.5 122 61.5
CiPaw.02G136800 Carya illinoinensis HOM05D004431 ORTHO05D005053 8.7e-34 147.5 122 61.5
Nitab4.5_0000189g0240 Nicotiana tabacum HOM05D004431 ORTHO05D005053 8.7e-34 147.5 122 61.5
arahy.Tifrunner.gnm1.ann1.BWR49H Arachis hypogaea HOM05D004431 ORTHO05D005053 1.1e-33 147.1 122 63.1
EL10Ac7g16396 Beta vulgaris HOM05D004431 ORTHO05D005053 1.1e-33 147.1 122 59.0
Ca_05011_v3 Cicer arietinum L. HOM05D004431 ORTHO05D005053 1.5e-33 146.7 122 62.3
Lj5A38T42 Lonicera japonica HOM05D004431 ORTHO05D005053 1.5e-33 146.7 124 62.1
Eucgr.F03171 Eucalyptus grandis HOM05D004431 ORTHO05D005053 2.5e-33 146.0 122 59.8
Glyma.07G036600 Glycine max HOM05D004431 ORTHO05D005053 2.5e-33 146.0 122 62.3
Glyma.16G006000 Glycine max HOM05D004431 ORTHO05D005053 2.5e-33 146.0 122 62.3
Nitab4.5_0003670g0020 Nicotiana tabacum HOM05D004431 ORTHO05D005053 2.5e-33 146.0 122 61.5
Actinidia32177 Actinidia chinensis HOM05D004431 ORTHO05D005053 9.7e-33 144.1 123 61.0
arahy.Tifrunner.gnm1.ann1.R6GQUS Arachis hypogaea HOM05D004431 ORTHO05D005053 9.7e-33 144.1 122 61.5
Migut.I01062 Erythranthe guttata HOM05D004431 ORTHO05D005053 9.7e-33 144.1 122 59.0
Lj3g0020734 Lotus japonicus HOM05D004431 ORTHO05D005053 9.7e-33 144.1 122 59.8
Sopen12g023680 Solanum pennellii HOM05D004431 ORTHO05D005053 9.7e-33 144.1 122 58.2
FAN05G1075 Fragaria x ananassa HOM05D004431 ORTHO05D005053 1.3e-32 143.7 122 61.5
Solyc12g049230.2 Solanum lycopersicum HOM05D004431 ORTHO05D005053 1.3e-32 143.7 122 58.2
Oeu007568.1 Olea europaea HOM05D004431 ORTHO05D005053 1.6e-32 143.3 123 57.7
Lj9A522G68 Lonicera japonica HOM05D004431 ORTHO05D005053 2.2e-32 142.9 126 61.9
Medtr8g019650 Medicago truncatula HOM05D004431 ORTHO05D005053 2.2e-32 142.9 122 60.7
Psat4g183320 Pisum sativum HOM05D004431 ORTHO05D005053 2.2e-32 142.9 122 61.5
AUR62001498 Chenopodium quinoa HOM05D004431 ORTHO05D005053 2.8e-32 142.5 122 58.2
VMungo0331G0816 Vigna mungo HOM05D004431 ORTHO05D005053 2.8e-32 142.5 122 60.7
AUR62009872 Chenopodium quinoa HOM05D004431 ORTHO05D005053 3.7e-32 142.1 122 58.2
Lalb_Chr25g0281161 Lupinus albus HOM05D004431 ORTHO05D005053 3.7e-32 142.1 122 61.5
Actinidia39085 Actinidia chinensis HOM05D004431 ORTHO05D005053 4.8e-32 141.7 122 59.0
Peaxi162Scf00177g00416 Petunia axillaris HOM05D004431 ORTHO05D005053 4.8e-32 141.7 122 59.8
Phvul.010G132600 Phaseolus vulgaris HOM05D004431 ORTHO05D005053 4.8e-32 141.7 122 62.3
CAN.G1387.2 Capsicum annuum HOM05D004431 ORTHO05D005053 6.3e-32 141.4 122 56.6
Oeu058720.1 Olea europaea HOM05D004431 ORTHO05D005053 6.3e-32 141.4 123 56.1
Hma1.2p1_0496F.1_g166170 Hydrangea macrophylla HOM05D004431 ORTHO05D005053 8.2e-32 141.0 127 55.1
HanXRQChr09g0276761 Helianthus annuus HOM05D004431 ORTHO05D005053 1.1e-31 140.6 123 57.7
Nn8g38722 Nelumbo nucifera HOM05D004431 ORTHO05D005053 1.8e-31 139.8 122 55.7
TAR624G0141 Trochodendron aralioides HOM05D004431 ORTHO05D005053 2.4e-31 139.4 122 56.6
Duzib160G0723 Durio zibethinus HOM05D004431 ORTHO05D005053 3.1e-31 139.0 122 59.8
TPR.G16457 Trifolium pratense HOM05D004431 ORTHO05D005053 4.1e-31 138.7 123 61.0
ECA232G4272 Erigeron canadensis HOM05D004431 ORTHO05D005053 5.3e-31 138.3 123 55.3
Lalb_Chr04g0263361 Lupinus albus HOM05D004431 ORTHO05D005053 5.3e-31 138.3 122 59.8
PGR119G2563 Punica granatum HOM05D004431 ORTHO05D005053 1.5e-30 136.7 125 60.8
Hund05746 Selenicereus undatus HOM05D004431 ORTHO05D005053 3.4e-30 135.6 121 55.4
SGA_v2.0_scaffold71G23865 Striga asiatica HOM05D004431 ORTHO05D005053 4.5e-30 135.2 123 60.2
Hund18691 Selenicereus undatus HOM05D004431 ORTHO05D005053 5.9e-30 134.8 120 59.2
MSTRG.22553 Avicennia marina HOM05D004431 ORTHO05D005053 1.7e-29 133.3 122 60.7
unitig_748.g7593 Utricularia gibba HOM05D004431 ORTHO05D005053 6.5e-29 131.3 123 56.9
PSO210G2002 Papaver somniferum HOM05D004431 ORTHO05D005053 8.5e-29 131.0 126 54.8
RcHm_v2.0_Chr2g0144801 Rosa chinensis HOM05D004431 ORTHO05D005053 8.5e-29 131.0 122 55.7
Psat7g060400 Pisum sativum HOM05D004431 ORTHO05D005053 1.1e-28 130.6 118 59.3
Sc12g0010510 Simmondsia chinensis HOM05D004431 ORTHO05D005053 1.1e-28 130.6 122 54.1
Lalb_Chr01g0013561 Lupinus albus HOM05D004431 ORTHO05D005053 1.4e-28 130.2 122 59.8
PSO210G0025 Papaver somniferum HOM05D004431 ORTHO05D005053 1.9e-28 129.8 127 55.9
Psat7g060480 Pisum sativum HOM05D004431 ORTHO05D005053 1.9e-28 129.8 117 59.0
Ah.08g216670 Amaranthus hybridus HOM05D004431 ORTHO05D005053 4.2e-28 128.6 119 55.5
unitig_32.g11537 Utricularia gibba HOM05D004431 ORTHO05D005053 1.6e-27 126.7 123 52.8
SGA_v2.0_scaffold122G33330 Striga asiatica HOM05D004431 ORTHO05D005053 3.6e-27 125.6 123 54.5
Nitab4.5_0002879g0100 Nicotiana tabacum HOM05D004431 ORTHO05D005053 6.1e-27 124.8 112 57.1
RhsimUnG0067200 Rhododendron simsii HOM05D004431 ORTHO05D005053 2.3e-26 122.9 103 61.2
MBI19_g19956_MAGBIO Magnolia biondii HOM05D004431 ORTHO05D005053 3.0e-26 122.5 122 51.6
RhsimUnG0003800 Rhododendron simsii HOM05D004431 ORTHO05D005053 6.7e-26 121.3 103 60.2
Peaxi162Scf00038g01825 Petunia axillaris HOM05D004431 ORTHO05D005053 1.5e-25 120.2 122 51.6
Os06g0206100 Oryza sativa ssp. japonica HOM05D004431 ORTHO05D005053 1.7e-24 116.7 126 47.6
Psat7g060320 Pisum sativum HOM05D004431 ORTHO05D005053 1.5e-22 110.2 93 63.4
SalBow6G5309 Salvia bowleyana HOM05D004431 ORTHO05D005053 1.5e-22 110.2 106 56.6
Zm00001eb278740 Zea mays HOM05D004431 ORTHO05D005053 5.9e-22 108.2 123 48.8
Zm00001eb373630 Zea mays HOM05D004431 ORTHO05D005053 3.8e-21 105.5 123 47.2
Lalb_Chr04g0261091 Lupinus albus HOM05D004431 ORTHO05D005053 8.5e-21 104.4 118 49.2
ATR0598G277 Amborella trichopoda HOM05D004431 ORTHO05D005053 2.1e-19 99.8 124 46.0
CDE06G2581 Ceratophyllum demersum HOM05D004431 ORTHO05D005053 7.9e-19 97.8 122 40.2
CiPaw.01G220700 Carya illinoinensis HOM05D004431 ORTHO05D005053 3.0e-18 95.9 123 44.7
Os03g0411000 Oryza sativa ssp. japonica HOM05D004431 ORTHO05D005053 5.7e-17 91.7 123 42.3
Lsat_1_v5_gn_4_93840 Lactuca sativa HOM05D004431 ORTHO05D005053 6.9e-15 84.7 122 39.3
TAR371G0531 Trochodendron aralioides HOM05D004431 ORTHO05D005053 1.7e-13 80.1 133 39.8
Zm00001eb019770 Zea mays HOM05D004431 ORTHO05D005053 5.0e-13 78.6 124 38.7
CAN.G1645.14 Capsicum annuum HOM05D004431 ORTHO05D005053 3.9e-10 68.9 122 36.1
Rhsim08G0237300 Rhododendron simsii HOM05D004431 ORTHO05D005053 3.3e-09 65.9 55 56.4
Pp3c9_9170 Physcomitrium patens HOM05D002148 ORTHO05D002547 4.1e-07 58.9 164 28.7


User provided reference genes

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