Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g40570 Schrenkiella parvula HOM05D006176 ORTHO05D007346 2.9e-61 238.4 125 100.0
Thhalv10011868m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 3.3e-57 224.9 125 92.0
Carub.0001s4336 Capsella rubella HOM05D006176 ORTHO05D007346 5.7e-57 224.2 125 91.2
BcaB04g17025 Brassica carinata HOM05D006176 ORTHO05D007346 3.1e-55 218.4 125 89.6
A08p01210 Brassica napus HOM05D006176 ORTHO05D007346 3.1e-55 218.4 125 89.6
BraA08t32172Z Brassica rapa HOM05D006176 ORTHO05D007346 3.1e-55 218.4 125 89.6
CARHR044470 Cardamine hirsuta HOM05D006176 ORTHO05D007346 5.3e-55 217.6 125 88.8
BcaC01g01436 Brassica carinata HOM05D006176 ORTHO05D007346 3.5e-54 214.9 125 88.8
C03p92010 Brassica napus HOM05D006176 ORTHO05D007346 3.5e-54 214.9 125 88.8
BolC3t21519H Brassica oleracea HOM05D006176 ORTHO05D007346 3.5e-54 214.9 125 88.8
BraA06t23268Z Brassica rapa HOM05D006176 ORTHO05D007346 3.5e-54 214.9 125 87.2
AT1G54120 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 5.9e-54 214.2 125 89.6
AL1G62840 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 7.7e-54 213.8 127 88.2
A06p00540 Brassica napus HOM05D006176 ORTHO05D007346 1.3e-53 213.0 125 86.4
BcaC08g43592 Brassica carinata HOM05D006176 ORTHO05D007346 6.5e-53 210.7 125 85.6
C06p09900 Brassica napus HOM05D006176 ORTHO05D007346 6.5e-53 210.7 125 85.6
BolC6t36062H Brassica oleracea HOM05D006176 ORTHO05D007346 6.5e-53 210.7 125 85.6
BcaB07g33263 Brassica carinata HOM05D006176 ORTHO05D007346 3.2e-52 208.4 125 84.0
C06p15630 Brassica napus HOM05D006176 ORTHO05D007346 1.6e-46 189.5 123 82.9
BcaB02g10861 Brassica carinata HOM05D006176 ORTHO05D007346 2.9e-45 185.3 123 78.9
Aa31LG10G1290 Aethionema arabicum HOM05D006176 ORTHO05D007346 3.6e-43 178.3 124 73.4
BolC6t36752H Brassica oleracea HOM05D006176 ORTHO05D007346 7.2e-36 154.1 99 84.8
Carub.0003s1365 Capsella rubella HOM05D006176 ORTHO05D007346 3.6e-35 151.8 128 63.3
Aa31LG8G1260 Aethionema arabicum HOM05D006176 ORTHO05D007346 6.1e-35 151.0 119 63.0
THA.LOC104810370 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 8.9e-34 147.1 115 68.7
Sp3g12300 Schrenkiella parvula HOM05D006176 ORTHO05D007346 1.2e-33 146.7 120 65.0
CARHR088900 Cardamine hirsuta HOM05D006176 ORTHO05D007346 2.0e-33 146.0 120 65.0
AT3G14060 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 7.5e-33 144.1 129 63.6
BcaC08g44161 Brassica carinata HOM05D006176 ORTHO05D007346 7.5e-33 144.1 123 65.9
Thhalv10021772m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 9.8e-33 143.7 128 62.5
THA.LOC104822658 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 2.2e-32 142.5 111 66.7
AL3G26260 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 4.9e-32 141.4 129 62.8
A01p39590 Brassica napus HOM05D006176 ORTHO05D007346 4.5e-30 134.8 125 60.8
BraA01t03999Z Brassica rapa HOM05D006176 ORTHO05D007346 4.5e-30 134.8 125 60.8
C01p50530 Brassica napus HOM05D006176 ORTHO05D007346 6.6e-29 131.0 125 58.4
BolC1t05004H Brassica oleracea HOM05D006176 ORTHO05D007346 8.6e-29 130.6 125 58.4
BcaNung04891 Brassica carinata HOM05D006176 ORTHO05D007346 4.3e-28 128.3 114 59.6
Nitab4.5_0010678g0020 Nicotiana tabacum HOM05D006176 ORTHO05D007346 3.1e-18 95.5 109 45.0
Manes.04G145900 Manihot esculenta HOM05D006176 ORTHO05D007346 2.6e-17 92.4 105 49.5
Nitab4.5_0000255g0320 Nicotiana tabacum HOM05D006176 ORTHO05D007346 2.6e-17 92.4 109 45.0
Atru.chr1.4021 Acer truncatum HOM05D006176 ORTHO05D007346 2.9e-16 89.0 96 51.0
Atru.chr1.4004 Acer truncatum HOM05D006176 ORTHO05D007346 1.1e-15 87.0 96 50.0
Cfa003523 Carpinus fangiana HOM05D006176 ORTHO05D007346 1.9e-15 86.3 110 48.2
Sopen06g022380 Solanum pennellii HOM05D006176 ORTHO05D007346 4.1e-15 85.1 100 44.0
PGSC0003DMG400004890 Solanum tuberosum HOM05D006176 ORTHO05D007346 5.4e-15 84.7 110 43.6
Thecc.06G122200 Theobroma cacao HOM05D006176 ORTHO05D007346 5.4e-15 84.7 109 42.2
Glyma.16G008800 Glycine max HOM05D006176 ORTHO05D007346 7.0e-15 84.3 114 46.5
TWI75G0921 Tripterygium wilfordii HOM05D006176 ORTHO05D007346 1.6e-14 83.2 111 44.1
Duzib192G0929 Durio zibethinus HOM05D006176 ORTHO05D007346 2.1e-14 82.8 97 47.4
Cpa.g.c40357 Carica papaya HOM05D006176 ORTHO05D007346 4.6e-14 81.6 105 44.8
Glyma.07G040000 Glycine max HOM05D006176 ORTHO05D007346 4.6e-14 81.6 109 45.0
BcaNung06452 Brassica carinata HOM05D006176 ORTHO05D007346 6.0e-14 81.3 73 61.6
Nn8g38624 Nelumbo nucifera HOM05D006176 ORTHO05D007346 7.8e-14 80.9 106 42.5
Haze_16045 Corylus avellana HOM05D006176 ORTHO05D007346 1.3e-13 80.1 96 47.9
Potri.001G167600 Populus trichocarpa HOM05D006176 ORTHO05D007346 1.3e-13 80.1 118 43.2
COL.COLO4_30741 Corchorus olitorius HOM05D006176 ORTHO05D007346 1.7e-13 79.7 106 44.3
CiPaw.01G217500 Carya illinoinensis HOM05D006176 ORTHO05D007346 2.3e-13 79.3 97 48.5
Gohir.A05G139800 Gossypium hirsutum HOM05D006176 ORTHO05D007346 5.1e-13 78.2 119 39.5
Gohir.D05G142000 Gossypium hirsutum HOM05D006176 ORTHO05D007346 5.1e-13 78.2 119 39.5
Gorai.009G146100 Gossypium raimondii HOM05D006176 ORTHO05D007346 5.1e-13 78.2 119 39.5
Phvul.010G128700 Phaseolus vulgaris HOM05D006176 ORTHO05D007346 5.1e-13 78.2 114 44.7
Migut.I01087 Erythranthe guttata HOM05D006176 ORTHO05D007346 1.1e-12 77.0 106 42.5
Solyc06g062930.1 Solanum lycopersicum HOM05D006176 ORTHO05D007346 1.1e-12 77.0 100 42.0
Potri.003G067200 Populus trichocarpa HOM05D006176 ORTHO05D007346 1.5e-12 76.6 101 42.6
Gohir.A10G054700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.9e-12 76.3 122 39.3
Gohir.D10G056700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.9e-12 76.3 122 39.3
MBI19_g09833_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 3.3e-12 75.5 94 43.6
Ah.08g216920 Amaranthus hybridus HOM05D006176 ORTHO05D007346 4.3e-12 75.1 112 39.3
Sed0000884 Sechium edule HOM05D006176 ORTHO05D007346 5.6e-12 74.7 107 41.1
Sc12g0010640 Simmondsia chinensis HOM05D006176 ORTHO05D007346 5.6e-12 74.7 104 40.4
Actinidia26022 Actinidia chinensis HOM05D006176 ORTHO05D007346 9.5e-12 73.9 110 40.9
Ca_23393_v3 Cicer arietinum L. HOM05D006176 ORTHO05D007346 9.5e-12 73.9 100 44.0
Gorai.011G060500 Gossypium raimondii HOM05D006176 ORTHO05D007346 9.5e-12 73.9 122 38.5
TAR624G0214 Trochodendron aralioides HOM05D006176 ORTHO05D007346 9.5e-12 73.9 102 46.1
Oeu043644.1 Olea europaea HOM05D006176 ORTHO05D007346 1.2e-11 73.6 105 41.0
Aqoxy2G03952 Aquilegia oxysepala HOM05D006176 ORTHO05D007346 2.1e-11 72.8 94 41.5
Peaxi162Scf00038g02015 Petunia axillaris HOM05D006176 ORTHO05D007346 2.1e-11 72.8 92 42.4
MD09G1180800 Malus domestica HOM05D006176 ORTHO05D007346 2.8e-11 72.4 105 43.8
Medtr8g021025 Medicago truncatula HOM05D006176 ORTHO05D007346 2.8e-11 72.4 110 40.0
RcHm_v2.0_Chr2g0146001 Rosa chinensis HOM05D006176 ORTHO05D007346 2.8e-11 72.4 112 42.0
vmacro22033 Vaccinium macrocarpon HOM05D006176 ORTHO05D007346 3.6e-11 72.0 100 40.0
MD17G1166900 Malus domestica HOM05D006176 ORTHO05D007346 4.7e-11 71.6 105 42.9
Dinv37860 Davidia involucrata HOM05D006176 ORTHO05D007346 8.1e-11 70.9 107 39.3
FAN05G0172 Fragaria x ananassa HOM05D006176 ORTHO05D007346 8.1e-11 70.9 109 41.3
FAN09G3283 Fragaria x ananassa HOM05D006176 ORTHO05D007346 8.1e-11 70.9 112 41.1
MBI13_g35417_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 8.1e-11 70.9 98 37.8
CANSAT56G3952 Cannabis sativa HOM05D006176 ORTHO05D007346 1.8e-10 69.7 92 43.5
FvH4_6g34980 Fragaria vesca HOM05D006176 ORTHO05D007346 2.3e-10 69.3 112 41.1
FAN14G1476 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.3e-10 69.3 112 41.1
Oeu000400.1 Olea europaea HOM05D006176 ORTHO05D007346 2.3e-10 69.3 96 44.8
EL10Ac7g16423 Beta vulgaris HOM05D006176 ORTHO05D007346 3.1e-10 68.9 112 38.4
Sabra03G0039100 Salix brachista HOM05D006176 ORTHO05D007346 3.1e-10 68.9 100 40.0
SGA_v2.0_scaffold122G33347 Striga asiatica HOM05D006176 ORTHO05D007346 3.1e-10 68.9 106 39.6
Lalb_Chr04g0263581 Lupinus albus HOM05D006176 ORTHO05D007346 5.2e-10 68.2 73 47.9
PGR102G2654 Punica granatum HOM05D006176 ORTHO05D007346 6.8e-10 67.8 97 40.2
Dinv20423 Davidia involucrata HOM05D006176 ORTHO05D007346 1.2e-09 67.0 105 40.0
TPR.G16753 Trifolium pratense HOM05D006176 ORTHO05D007346 1.2e-09 67.0 97 42.3
Lj3g0022886 Lotus japonicus HOM05D006176 ORTHO05D007346 1.5e-09 66.6 100 44.0
Migut.D00934 Erythranthe guttata HOM05D006176 ORTHO05D007346 3.4e-09 65.5 108 40.7
PSO421G0391 Papaver somniferum HOM05D006176 ORTHO05D007346 3.4e-09 65.5 97 40.2
Lalb_Chr04g0261121 Lupinus albus HOM05D006176 ORTHO05D007346 4.4e-09 65.1 101 36.6
Rhsim12G0210400 Rhododendron simsii HOM05D006176 ORTHO05D007346 4.4e-09 65.1 95 41.1
Rhsim12G0210800 Rhododendron simsii HOM05D006176 ORTHO05D007346 9.9e-09 63.9 99 39.4
Prupe.3G039100 Prunus persica HOM05D006176 ORTHO05D007346 1.3e-08 63.5 97 43.3
ClCG07G014560 Citrullus lanatus HOM05D006176 ORTHO05D007346 3.7e-08 62.0 102 40.2
Ciclev10027265m.g Citrus clementina HOM05D006176 ORTHO05D007346 3.7e-08 62.0 76 46.1
DCAR_022691 Daucus carota HOM05D006176 ORTHO05D007346 8.3e-08 60.8 99 40.4
Lsat_1_v5_gn_4_94161 Lactuca sativa HOM05D006176 ORTHO05D007346 1.4e-07 60.1 110 32.7
MELO3C022667.2 Cucumis melo HOM05D006176 ORTHO05D007346 3.2e-07 58.9 96 38.5
CsaV3_3G030710 Cucumis sativus L. HOM05D006176 ORTHO05D007346 4.1e-07 58.5 96 38.5
PSO063G0286 Papaver somniferum HOM05D006176 ORTHO05D007346 4.1e-07 58.5 88 42.0
Lalb_Chr14g0361931 Lupinus albus HOM05D006176 ORTHO05D007346 1.6e-06 56.6 99 36.4
SGA_v2.0_scaffold4G02067 Striga asiatica HOM05D006176 ORTHO05D007346 2.1e-06 56.2 91 36.3
Sed0005659 Sechium edule HOM05D006176 ORTHO05D007346 7.8e-06 54.3 104 35.6
Sopen03g041090 Solanum pennellii HOM05D006176 ORTHO05D007346 7.8e-06 54.3 113 34.5


User provided reference genes

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