Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 1.8e-309 1065.1 529 100.0
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 1.6e-289 998.8 531 92.5
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 4.0e-277 957.6 528 88.3
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 9.8e-276 953.0 529 88.5
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 1.3e-275 952.6 529 87.9
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 3.7e-275 951.0 530 87.4
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 8.3e-275 949.9 529 87.1
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 1.4e-274 949.1 525 87.8
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 5.4e-274 947.2 525 87.6
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 2.7e-273 944.9 530 87.4
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 1.5e-271 939.1 533 86.3
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 4.3e-271 937.6 529 86.2
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 1.4e-253 879.4 531 80.8
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 1.4e-184 650.2 540 58.1
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 2.6e-183 646.0 537 60.1
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 2.6e-183 646.0 540 58.3
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 7.5e-183 644.4 541 58.6
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 2.2e-182 642.9 533 58.5
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 4.8e-182 641.7 545 58.5
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 3.5e-180 635.6 537 58.3
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 2.9e-179 632.5 530 58.3
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 6.5e-179 631.3 540 58.1
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 4.2e-178 628.6 540 57.4
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 7.2e-178 627.9 536 58.8
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 2.8e-177 625.9 540 57.8
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 3.6e-177 625.5 541 56.9
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 6.1e-177 624.8 545 56.7
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 3.0e-176 622.5 540 57.0
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 5.2e-176 621.7 534 58.2
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 1.2e-175 620.5 548 57.5
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 4.4e-175 618.6 525 57.3
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 7.5e-175 617.8 540 56.3
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 1.3e-174 617.1 529 58.2
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 4.9e-174 615.1 530 57.2
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 1.2e-172 610.5 537 56.6
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 1.7e-171 606.7 533 56.8
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 5.0e-171 605.1 536 56.5
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 5.0e-171 605.1 534 56.2
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 8.6e-171 604.4 532 57.9
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 1.6e-169 600.1 530 56.8
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 2.8e-169 599.4 526 58.0
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 2.0e-167 593.2 532 55.5
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 1.3e-166 590.5 529 54.8
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 2.9e-166 589.3 533 57.2
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 3.7e-166 589.0 532 55.3
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 6.4e-166 588.2 523 57.4
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.1e-165 587.4 532 55.5
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.4e-165 586.3 523 57.2
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 2.0e-164 583.2 531 55.6
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 2.7e-164 582.8 571 52.5
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 3.5e-164 582.4 533 54.2
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 7.8e-164 581.3 526 54.8
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 9.5e-162 574.3 536 54.9
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 1.2e-161 573.9 537 52.5
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 1.2e-161 573.9 536 53.0
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 2.8e-161 572.8 536 53.0
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 2.8e-161 572.8 553 51.9
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 4.7e-161 572.0 535 52.5
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 1.1e-160 570.9 533 52.5
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 1.8e-160 570.1 536 53.0
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 5.2e-160 568.5 531 53.9
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.2e-159 567.4 496 55.4
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 1.2e-159 567.4 631 49.0
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 5.8e-159 565.1 532 54.1
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 7.5e-159 564.7 528 52.3
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 7.5e-159 564.7 523 55.8
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 8.3e-158 561.2 527 53.3
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 2.7e-156 556.2 494 56.5
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 5.6e-154 548.5 528 51.7
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 3.1e-152 542.7 532 52.8
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 4.4e-151 538.9 539 51.8
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 9.9e-151 537.7 523 54.5
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 2.2e-150 536.6 528 51.1
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 3.2e-149 532.7 369 72.9
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 7.8e-148 528.1 526 52.5
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 7.8e-148 528.1 514 53.7
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 3.9e-147 525.8 484 54.1
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 6.6e-147 525.0 758 40.8
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 1.4e-144 517.3 539 50.8
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 2.4e-144 516.5 475 55.8
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 2.0e-143 513.5 470 53.8
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 9.2e-141 504.6 497 57.3
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 1.3e-139 500.7 517 48.5
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 3.0e-139 499.6 510 51.6
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 1.9e-133 480.3 531 48.8
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 1.9e-133 480.3 537 48.2
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.5e-130 470.7 533 47.7
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 4.3e-130 469.2 364 61.3
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 9.6e-130 468.0 525 46.1
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 3.5e-124 449.5 438 51.6
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.4e-117 427.6 519 43.4
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 1.6e-113 414.1 530 43.4
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 9.0e-112 408.3 531 42.7
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 5.8e-111 405.6 535 41.9
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 2.2e-105 387.1 468 46.6
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 1.4e-104 384.4 295 60.0
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 4.7e-92 342.8 260 61.2
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 4.1e-88 329.7 256 59.4
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 3.2e-85 320.1 528 36.0
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.4e-83 314.7 186 78.5
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 2.8e-81 307.0 268 58.6
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 1.4e-80 304.7 276 57.6
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.6e-74 283.9 316 50.0
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 1.8e-72 277.7 282 52.1
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.2e-71 275.0 207 60.4
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 4.0e-67 260.0 255 55.3
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 6.6e-62 242.7 261 48.7
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 3.6e-60 236.9 439 36.4
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 9.2e-56 222.2 288 45.1
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 5.4e-48 196.4 188 54.3
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 2.5e-45 187.6 427 32.6
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 1.2e-36 158.7 139 59.7
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 1.2e-36 158.7 139 59.7
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 2.9e-33 147.5 125 60.0
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 1.1e-32 145.6 101 70.3
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 7.1e-32 142.9 311 30.2
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.7e-30 138.3 120 52.5
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 4.9e-25 120.2 494 26.5
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.5e-21 108.6 108 55.6
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 2.1e-15 88.2 131 40.5
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 3.1e-11 74.3 336 25.0
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 1.5e-10 72.0 338 23.7
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 4.5e-10 70.5 69 47.8
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 4.5e-10 70.5 411 22.1
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 3.8e-09 67.4 69 46.4
BcaB07g33306 Brassica carinata HOM05D000305 ORTHO05D000065 4.9e-09 67.0 33 87.9
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 4.2e-08 63.9 372 23.1
Ciclev10001481m.g Citrus clementina HOM05D008167 ORTHO05D010296 7.1e-08 63.2 329 23.7
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.2e-07 62.4 33 72.7
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 1.6e-07 62.0 352 24.1
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 6.0e-07 60.1 338 23.1
Lj3g0012000 Lotus japonicus HOM05D008167 ORTHO05D010296 3.0e-06 57.8 288 25.0


User provided reference genes

Program Settings