Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 3.5e-169 598.2 305 100.0
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.1e-165 586.6 305 97.7
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 8.4e-163 577.0 305 96.1
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 9.3e-162 573.5 305 95.7
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 1.3e-160 569.7 305 95.4
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 5.9e-156 554.3 303 91.1
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 1.0e-155 553.5 306 91.2
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 1.0e-155 553.5 304 91.8
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.9e-154 549.3 304 90.8
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 3.3e-151 538.5 307 91.9
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 3.1e-149 531.9 304 87.2
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 4.5e-148 528.1 303 89.4
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 7.4e-143 510.8 314 83.8
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.7e-139 499.6 309 81.9
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 2.9e-139 498.8 351 75.8
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 2.9e-139 498.8 351 75.8
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 2.0e-135 486.1 304 82.9
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 1.4e-133 479.9 306 83.3
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 2.2e-131 472.6 303 79.9
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 9.4e-130 467.2 345 73.3
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 9.4e-130 467.2 345 73.3
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.4e-125 453.4 309 74.1
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 4.2e-122 441.8 309 72.8
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 2.7e-121 439.1 315 73.3
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 1.2e-119 433.7 302 72.5
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.0e-119 433.0 307 73.9
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 9.8e-119 430.6 309 74.1
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.3e-118 430.3 309 72.2
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 2.4e-117 426.0 292 75.3
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 7.0e-117 424.5 309 72.2
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 7.0e-117 424.5 309 71.5
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 1.2e-116 423.7 307 72.3
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 3.5e-116 422.2 318 71.4
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.9e-116 421.4 309 70.9
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.9e-114 416.4 307 70.7
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 7.3e-114 414.5 309 72.5
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 9.5e-114 414.1 310 72.6
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 2.1e-113 412.9 309 72.2
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 8.0e-113 411.0 307 71.7
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 8.0e-113 411.0 307 72.6
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 2.3e-112 409.5 310 71.0
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.0e-112 409.1 309 70.6
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 5.2e-112 408.3 310 70.6
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 6.8e-112 407.9 341 65.7
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 2.0e-111 406.4 307 70.7
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.4e-110 401.4 312 71.5
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 8.3e-110 401.0 310 71.9
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 7.0e-109 397.9 308 71.1
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.2e-108 397.1 308 70.1
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.0e-108 396.4 309 70.6
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 3.5e-108 395.6 312 68.9
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.6e-108 395.2 323 69.0
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.0e-107 394.0 307 67.4
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 8.6e-107 391.0 309 68.6
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 1.5e-106 390.2 311 70.7
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.9e-106 389.8 309 68.3
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 3.3e-106 389.0 310 68.4
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 4.3e-106 388.7 308 67.9
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 9.5e-106 387.5 308 69.5
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 1.2e-105 387.1 309 68.0
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 1.6e-105 386.7 307 68.7
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 3.6e-105 385.6 314 68.5
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.4e-104 383.6 310 69.7
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.8e-104 383.3 307 69.4
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 4.0e-104 382.1 310 68.1
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.4e-103 379.0 314 68.2
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 3.4e-103 379.0 309 68.3
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 5.8e-103 378.3 307 67.4
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 6.4e-102 374.8 312 67.3
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 6.4e-102 374.8 306 68.0
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 8.3e-102 374.4 310 66.1
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 8.3e-102 374.4 305 63.6
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.2e-101 372.5 315 65.7
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 5.4e-101 371.7 237 82.7
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 7.0e-101 371.3 307 67.1
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 2.7e-100 369.4 311 64.0
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 1.7e-99 366.7 310 64.5
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 3.9e-99 365.5 319 65.5
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 1.5e-98 363.6 310 65.8
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.9e-98 363.2 229 83.8
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.9e-98 363.2 229 83.8
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 2.5e-98 362.8 286 70.3
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.5e-98 362.8 312 67.3
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 3.3e-98 362.5 339 58.7
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 5.6e-98 361.7 309 64.7
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 3.6e-97 359.0 314 64.3
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.2e-95 354.0 312 62.2
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 2.6e-95 352.8 311 64.3
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 3.4e-95 352.4 322 61.5
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.3e-94 350.5 260 70.4
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 6.0e-92 341.7 309 63.4
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 6.0e-92 341.7 340 58.2
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 3.0e-91 339.3 323 60.1
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 5.6e-90 335.1 322 61.8
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.6e-89 332.4 321 61.4
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.4e-88 330.5 326 61.7
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.8e-88 330.1 266 68.8
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.3e-88 329.7 265 69.1
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 2.0e-87 326.6 275 66.2
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 3.4e-87 325.9 310 61.6
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 4.4e-87 325.5 233 73.0
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 1.7e-86 323.6 274 65.7
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 3.8e-86 322.4 292 64.7
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 3.2e-85 319.3 309 61.8
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 1.2e-84 317.4 284 65.1
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 4.6e-84 315.5 284 63.7
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 2.3e-83 313.2 309 61.2
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-82 310.5 264 65.9
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.1e-80 302.8 314 59.6
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 5.2e-80 302.0 218 72.5
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 8.9e-80 301.2 252 67.1
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.5e-79 300.4 219 72.6
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 7.1e-77 291.6 295 59.0
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 7.1e-77 291.6 287 61.3
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 3.5e-76 289.3 244 68.0
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.7e-75 287.0 259 65.3
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 6.6e-75 285.0 259 64.9
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 5.6e-74 282.0 147 95.2
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 2.8e-73 279.6 234 65.0
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 2.6e-71 273.1 239 65.3
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.6e-65 253.8 215 65.6
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 6.2e-65 251.9 189 71.4
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.8e-64 250.4 236 63.1
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.5e-63 247.3 236 62.7
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 3.0e-59 233.0 237 59.9
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 4.8e-57 225.7 242 58.7
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 4.0e-56 222.6 247 55.5
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 5.8e-55 218.8 234 59.0
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 7.6e-55 218.4 232 57.8
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.2e-53 213.0 239 57.3
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 5.5e-53 212.2 303 45.9
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 7.4e-50 201.8 173 62.4
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.6e-49 200.7 244 51.2
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.4e-48 197.6 156 67.9
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 2.9e-46 189.9 323 38.4
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 3.8e-46 189.5 248 48.8
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.7e-44 183.3 143 69.2
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 5.1e-43 179.1 322 39.1
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.5e-42 176.8 248 51.2
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-40 171.4 150 66.0
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.8e-40 170.6 266 42.5
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 6.5e-38 162.2 290 40.7
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.7e-35 152.1 74 91.9
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.1e-34 151.4 169 55.6
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.3e-32 142.5 157 55.4
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 4.2e-29 132.9 73 76.7
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 1.4e-27 127.9 73 78.1
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.4e-24 117.9 126 56.3
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 2.4e-24 117.1 163 43.6
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 6.5e-22 109.0 179 31.3
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 1.9e-21 107.5 59 74.6
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 4.4e-18 96.3 94 57.4
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 1.7e-17 94.4 50 76.0
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 1.4e-11 74.7 72 65.3
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 2.3e-11 73.9 50 74.0
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.3e-11 73.9 50 74.0
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 2.0e-07 60.8 100 38.0
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.0e-07 60.8 102 40.2


User provided reference genes

Program Settings