Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 1.8e-270 935.3 461 100.0
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.6e-250 869.0 461 92.8
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.1e-235 819.7 462 88.1
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 5.6e-235 817.4 461 87.9
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 6.2e-234 813.9 461 86.8
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 3.3e-227 791.6 465 85.2
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 3.3e-227 791.6 465 85.2
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 4.3e-227 791.2 462 84.6
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 6.2e-226 787.3 465 84.5
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 8.1e-226 786.9 465 84.5
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.1e-222 776.5 465 84.3
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 4.6e-221 771.2 475 79.8
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.5e-219 766.1 477 79.0
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.6e-218 762.7 476 79.6
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 6.9e-217 757.3 477 79.2
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 4.2e-214 748.0 475 77.7
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 3.0e-212 741.9 476 77.5
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 8.2e-210 733.8 479 77.0
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 5.7e-203 711.1 475 75.4
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 3.1e-201 705.3 475 74.9
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 3.1e-201 705.3 475 74.9
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 7.7e-200 700.7 466 75.1
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 2.5e-198 695.7 467 74.9
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 5.5e-198 694.5 474 73.8
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 5.3e-185 651.4 477 67.9
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 3.8e-183 645.2 475 67.2
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 3.2e-182 642.1 478 66.9
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-181 639.8 473 67.4
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 3.6e-181 638.6 473 66.8
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.0e-180 637.1 474 66.0
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.2e-180 634.8 475 66.1
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.2e-180 634.8 476 66.6
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 5.2e-180 634.8 479 66.4
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 6.7e-180 634.4 474 66.0
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.1e-179 633.6 475 65.7
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.6e-179 632.5 473 65.5
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.7e-179 631.3 476 66.4
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.3e-178 630.2 477 66.2
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 2.2e-178 629.4 475 65.9
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 2.2e-178 629.4 475 65.9
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 2.2e-178 629.4 476 65.8
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.8e-178 629.0 476 65.5
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 6.3e-178 627.9 473 65.3
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.4e-177 626.7 473 64.1
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.8e-177 626.3 478 64.2
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.4e-177 625.9 478 64.6
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 3.1e-177 625.5 473 66.0
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.7e-176 622.5 476 65.3
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 3.5e-176 622.1 477 64.8
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 1.7e-175 619.8 476 65.1
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.7e-175 619.8 478 64.0
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.8e-175 618.6 475 64.0
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 5.0e-175 618.2 475 64.6
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 4.2e-174 615.1 480 63.5
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 4.2e-174 615.1 474 64.6
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 5.5e-174 614.8 473 63.8
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.2e-173 613.6 335 89.3
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 2.7e-173 612.5 478 63.6
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 8.0e-173 610.9 473 63.8
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 8.0e-173 610.9 478 63.6
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 1.0e-172 610.5 477 63.7
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 2.3e-172 609.4 474 63.9
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 3.0e-172 609.0 469 63.3
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 4.0e-172 608.6 468 64.1
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.8e-172 607.8 512 60.4
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.4e-171 605.5 510 60.6
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.7e-171 604.7 493 62.3
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 6.3e-170 601.3 479 62.6
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.1e-169 599.0 471 62.2
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.6e-168 596.7 479 62.0
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 3.5e-168 595.5 517 57.6
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.0e-167 594.0 483 63.4
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.7e-167 593.2 475 62.1
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 2.2e-167 592.8 517 58.4
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 6.5e-167 591.3 517 58.2
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 2.5e-166 589.3 517 58.2
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.2e-165 587.0 474 61.2
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 2.7e-165 585.9 480 59.4
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 4.7e-165 585.1 523 59.1
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 6.1e-165 584.7 463 61.3
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 1.4e-164 583.6 475 60.2
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.4e-164 583.6 483 60.7
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.5e-163 580.1 542 56.3
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.5e-163 580.1 484 60.7
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 2.0e-163 579.7 480 59.0
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 3.4e-163 578.9 481 59.5
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.7e-163 578.2 431 67.1
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 6.3e-162 574.7 474 61.6
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.1e-161 573.9 474 59.7
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 7.0e-161 571.2 479 60.3
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.6e-160 570.1 479 60.3
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.0e-159 567.4 517 56.3
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 3.8e-159 565.5 500 57.0
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 5.0e-159 565.1 433 64.2
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.1e-158 563.9 474 58.6
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.9e-158 563.1 478 59.2
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 2.5e-158 562.8 483 60.2
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.3e-158 562.4 475 59.8
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 4.3e-158 562.0 517 54.4
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 4.3e-158 562.0 476 59.9
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.3e-156 556.2 499 57.9
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.0e-156 555.4 531 53.5
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.2e-155 553.9 483 59.8
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 7.5e-155 551.2 434 63.4
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.7e-154 550.1 479 57.2
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 3.9e-151 538.9 476 57.6
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 3.3e-150 535.8 479 56.8
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 1.0e-148 530.8 435 61.1
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 2.2e-146 523.1 474 56.8
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.4e-145 519.6 477 55.3
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 9.2e-145 517.7 477 55.3
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.2e-144 517.3 398 66.1
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 2.3e-143 513.1 391 66.0
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 7.3e-142 508.1 490 51.8
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 4.1e-137 492.3 493 50.9
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.1e-136 490.0 394 61.7
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 1.0e-135 487.6 378 64.6
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.7e-135 486.9 387 64.6
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 3.0e-135 486.1 389 63.2
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 3.9e-135 485.7 434 59.7
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 2.1e-133 479.9 283 77.4
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 4.9e-130 468.8 429 55.0
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.9e-129 466.8 507 47.9
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 6.0e-128 461.8 290 72.1
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 2.3e-127 459.9 436 56.0
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 3.6e-125 452.6 457 51.4
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 6.2e-125 451.8 434 57.1
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.6e-123 446.4 460 52.6
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.2e-120 437.6 287 67.9
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.1e-118 431.0 347 63.7
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 2.9e-114 416.4 477 47.8
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.4e-113 413.3 396 56.1
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 6.0e-112 408.7 302 61.3
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.2e-105 386.3 394 48.7
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.1e-102 377.9 287 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 1.2e-99 367.9 529 40.1
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.0e-95 354.8 304 54.3
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.9e-94 350.5 303 55.4
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 3.0e-87 326.6 539 38.0
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 3.0e-87 326.6 381 43.6
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.2e-83 314.7 301 56.5
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.8e-79 300.8 379 47.0
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.7e-69 266.5 297 53.2
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 9.1e-60 235.3 133 85.7
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 9.4e-57 225.3 205 52.7
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 5.7e-54 216.1 428 36.7
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.2e-49 199.9 179 57.0
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 5.2e-47 193.0 189 59.3
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 1.7e-42 177.9 190 55.8
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.4e-38 163.3 95 81.1
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.2e-37 161.0 141 62.4
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.7e-37 160.2 92 81.5
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.4e-36 156.4 95 76.8
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 5.0e-34 149.8 186 48.9
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 6.6e-34 149.4 126 49.2
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 9.5e-33 145.6 177 47.5
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.0e-30 137.9 144 47.2
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.0e-30 137.9 144 47.2
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 8.3e-29 132.5 108 63.9
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 2.0e-27 127.9 87 62.1
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 2.0e-27 127.9 87 62.1
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.3e-26 125.2 174 44.3
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.8e-23 114.8 113 53.1
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.7e-19 100.9 140 45.0
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 7.1e-12 76.3 44 77.3
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.2e-11 75.5 66 59.1
BcaC05g25858 Brassica carinata HOM05D004150 ORTHO05D032065 1.2e-08 65.5 86 50.0
BcaB07g31995 Brassica carinata HOM05D004150 ORTHO05D032065 6.2e-08 63.2 86 48.8


User provided reference genes

Program Settings