Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 4.7e-70 268.1 132 100.0
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 9.8e-60 233.8 132 89.4
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 2.2e-59 232.6 132 87.9
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 2.4e-58 229.2 132 84.1
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 3.8e-56 221.9 132 84.1
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 6.6e-56 221.1 132 84.1
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 6.6e-56 221.1 132 85.6
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 8.6e-56 220.7 132 84.8
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.9e-55 219.5 132 82.6
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 2.8e-54 215.7 132 84.1
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 2.8e-54 215.7 132 84.1
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 2.8e-54 215.7 132 84.1
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 5.7e-52 208.0 133 78.9
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 3.7e-51 205.3 133 77.4
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 1.2e-49 200.3 133 76.7
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.6e-49 199.9 132 77.3
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 2.1e-46 189.5 133 72.9
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 1.7e-43 179.9 133 72.2
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 8.3e-43 177.6 119 75.6
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 2.2e-35 152.9 132 61.4
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 1.7e-32 143.3 132 56.8
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 4.6e-25 118.6 119 57.1
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 1.7e-24 116.7 126 49.2
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 2.5e-23 112.8 126 49.2
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 5.6e-23 111.7 124 47.6
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 7.3e-23 111.3 124 46.8
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.2e-22 110.5 124 46.8
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 1.2e-22 110.5 123 51.2
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 2.8e-22 109.4 124 48.4
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 3.6e-22 109.0 126 48.4
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 3.6e-22 109.0 118 50.8
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 4.7e-22 108.6 126 46.8
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 4.7e-22 108.6 123 48.8
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 1.1e-21 107.5 128 47.7
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.4e-21 107.1 124 46.0
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 4.0e-21 105.5 90 56.7
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 4.0e-21 105.5 88 59.1
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 4.0e-21 105.5 125 46.4
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 6.9e-21 104.8 125 46.4
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 1.2e-20 104.0 134 45.5
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 1.5e-20 103.6 122 46.7
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 2.0e-20 103.2 120 45.0
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 7.6e-20 101.3 123 48.0
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 7.6e-20 101.3 125 48.0
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.7e-19 100.1 126 45.2
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 2.2e-19 99.8 121 46.3
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.2e-19 99.8 126 45.2
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.8e-19 99.0 126 45.2
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 8.4e-19 97.8 125 41.6
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 1.1e-18 97.4 73 61.6
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.4e-18 97.1 121 43.8
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.4e-18 97.1 128 39.8
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 1.9e-18 96.7 130 44.6
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 3.2e-18 95.9 126 44.4
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.2e-18 95.9 127 43.3
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 4.2e-18 95.5 129 45.7
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 4.2e-18 95.5 122 45.1
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 5.4e-18 95.1 127 43.3
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 1.2e-17 94.0 120 46.7
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 1.2e-17 94.0 126 42.1
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.2e-17 94.0 120 44.2
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 2.7e-17 92.8 113 47.8
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 3.5e-17 92.4 120 43.3
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 4.6e-17 92.0 130 41.5
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.6e-17 92.0 120 43.3
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.6e-17 92.0 120 43.3
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.6e-17 92.0 120 43.3
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 6.0e-17 91.7 127 44.9
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 6.0e-17 91.7 120 43.3
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 6.0e-17 91.7 120 43.3
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 6.0e-17 91.7 126 41.3
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 7.8e-17 91.3 84 52.4
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 7.8e-17 91.3 123 42.3
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.0e-16 90.9 123 41.5
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 1.7e-16 90.1 123 44.7
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.3e-16 89.7 120 43.3
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 3.0e-16 89.4 86 50.0
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.0e-16 89.4 90 52.2
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.0e-16 89.4 121 40.5
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 3.0e-16 89.4 120 47.5
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.9e-16 89.0 119 45.4
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 3.9e-16 89.0 125 40.0
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 3.9e-16 89.0 131 42.0
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 6.6e-16 88.2 81 49.4
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 1.5e-15 87.0 118 44.9
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 1.9e-15 86.7 124 40.3
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 2.5e-15 86.3 126 39.7
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 2.1e-14 83.2 123 40.7
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 3.6e-14 82.4 128 40.6
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 4.8e-14 82.0 128 40.6
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 1.4e-13 80.5 68 52.9
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 6.9e-13 78.2 117 41.0
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 6.9e-13 78.2 58 56.9
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 2.0e-12 76.6 56 57.1
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 2.0e-12 76.6 58 55.2
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 3.4e-12 75.9 67 50.7
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 1.3e-11 73.9 121 38.8
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 2.9e-11 72.8 120 40.8
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 8.4e-11 71.2 122 34.4
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.1e-10 70.9 41 65.9
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 5.4e-10 68.6 63 44.4
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 7.4e-07 58.2 46 58.7
ClCG03G004360 Citrullus lanatus HOM05D002014 ORTHO05D001958 8.1e-06 54.7 121 30.6


User provided reference genes

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