Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 2.3e-257 891.7 451 100.0
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 5.3e-238 827.4 458 92.8
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 2.6e-237 825.1 459 92.8
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.3e-236 822.8 459 92.6
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 1.7e-236 822.4 454 92.5
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 2.2e-236 822.0 455 93.2
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 2.9e-236 821.6 458 92.4
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 3.2e-235 818.1 450 92.4
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 9.4e-235 816.6 458 92.4
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 8.8e-233 810.1 455 91.0
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.5e-232 809.3 453 91.6
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 7.4e-232 807.0 453 91.4
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 5.0e-228 794.3 458 90.8
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 2.6e-221 771.9 452 87.4
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 3.2e-211 738.4 458 82.8
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 2.3e-201 705.7 362 97.5
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 3.0e-201 705.3 361 97.8
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 6.6e-188 661.0 455 75.8
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 9.5e-187 657.1 455 75.4
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 2.1e-186 656.0 463 74.5
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 3.6e-186 655.2 344 95.6
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 4.7e-186 654.8 455 75.2
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 6.2e-186 654.4 365 88.5
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 1.8e-185 652.9 454 74.7
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 7.5e-184 647.5 455 74.9
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 9.8e-184 647.1 463 75.8
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 1.7e-183 646.4 462 73.6
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 2.4e-182 642.5 358 91.1
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 2.4e-182 642.5 456 73.7
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 3.2e-182 642.1 456 75.4
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.1e-181 639.4 458 74.0
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.1e-181 639.4 458 74.0
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 2.1e-181 639.4 374 85.0
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 2.1e-181 639.4 455 74.7
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 7.8e-181 637.5 365 86.8
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.0e-180 637.1 362 88.1
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.3e-180 636.0 454 74.4
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 3.0e-180 635.6 376 84.0
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 6.6e-180 634.4 379 84.2
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 2.5e-179 632.5 365 86.6
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 3.3e-179 632.1 362 87.0
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.1e-178 629.4 362 86.5
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 2.1e-178 629.4 365 85.2
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 2.8e-178 629.0 366 86.1
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 2.8e-178 629.0 361 85.6
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.1e-177 627.1 366 84.4
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.4e-177 626.7 457 72.9
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 2.3e-177 625.9 365 84.7
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 4.0e-177 625.2 383 80.2
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 5.2e-177 624.8 361 83.9
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 5.2e-177 624.8 362 84.8
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.2e-176 623.6 405 78.5
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.5e-176 623.2 365 84.7
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.0e-176 622.9 361 84.2
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 3.4e-176 622.1 449 72.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 5.8e-176 621.3 361 83.9
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 5.8e-176 621.3 361 85.0
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 9.9e-176 620.5 363 84.6
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 9.9e-176 620.5 359 86.4
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 1.9e-174 616.3 364 84.3
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 4.1e-174 615.1 361 82.3
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.6e-173 613.2 395 78.7
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 6.0e-173 611.3 358 84.1
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 1.3e-172 610.1 362 82.9
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 3.0e-172 609.0 400 78.0
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 6.6e-172 607.8 409 76.0
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.9e-171 606.3 369 81.8
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 1.9e-171 606.3 403 76.2
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 5.6e-171 604.7 442 71.0
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 7.3e-171 604.4 360 80.8
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 7.3e-171 604.4 377 80.4
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 1.2e-170 603.6 359 84.1
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 1.6e-170 603.2 417 74.3
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 2.2e-167 592.8 350 83.4
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 6.4e-167 591.3 360 81.1
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 8.4e-167 590.9 344 84.3
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.1e-166 590.5 373 80.2
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 1.9e-166 589.7 344 84.6
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 2.4e-166 589.3 353 82.2
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 3.2e-166 589.0 366 80.1
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 9.2e-166 587.4 344 85.2
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 9.2e-166 587.4 357 81.5
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 3.9e-164 582.0 351 81.5
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 3.9e-164 582.0 351 81.5
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 5.1e-164 581.6 464 66.6
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.9e-163 579.7 404 74.5
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 2.5e-163 579.3 397 73.8
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 1.2e-162 577.0 423 72.8
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.6e-162 576.6 397 73.3
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.8e-161 573.2 338 83.7
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 2.4e-161 572.8 457 67.6
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 3.1e-161 572.4 531 59.1
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 4.4e-160 568.5 360 76.4
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 5.8e-160 568.2 368 78.8
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 6.4e-159 564.7 337 82.5
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 7.8e-157 557.8 339 82.3
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 1.2e-152 543.9 379 74.9
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 7.9e-149 531.2 418 67.5
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 1.3e-148 530.4 312 84.0
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 6.7e-148 528.1 361 72.3
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 8.7e-148 527.7 297 87.9
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 4.8e-146 521.9 301 84.7
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.4e-145 520.4 443 63.2
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 9.0e-145 517.7 328 79.6
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 6.4e-143 511.5 387 66.7
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 2.4e-142 509.6 339 72.6
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 4.2e-142 508.8 312 78.8
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 2.1e-141 506.5 338 72.5
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 3.0e-140 502.7 353 70.5
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 9.0e-137 491.1 282 85.1
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 3.5e-133 479.2 339 68.1
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 6.7e-132 474.9 278 84.9
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.7e-131 471.9 385 66.2
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.7e-131 471.9 338 69.8
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 3.0e-124 449.5 316 75.0
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 1.8e-121 440.3 259 82.6
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 2.9e-119 433.0 313 71.9
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 8.8e-116 421.4 251 81.3
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 8.3e-98 361.7 208 86.1
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 4.1e-97 359.4 284 69.7
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 5.7e-91 339.0 186 92.5
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 9.8e-91 338.2 185 88.1
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.2e-80 304.7 360 53.3
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 8.0e-77 292.0 376 44.1
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 2.9e-74 283.5 335 45.4
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.0e-63 246.9 151 80.8
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.1e-61 238.8 143 82.5
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.4e-57 227.3 334 36.2
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 2.1e-56 224.2 124 87.1
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.7e-50 204.5 375 37.1
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.4e-41 174.1 104 79.8
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.3e-39 168.3 130 71.5
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.1e-38 165.2 109 78.0
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 5.6e-38 162.9 107 76.6
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 2.7e-32 144.1 80 90.0
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 2.7e-32 144.1 80 90.0
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 2.7e-32 144.1 80 90.0
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 8.7e-31 139.0 80 86.2
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 8.7e-31 139.0 80 86.2
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 3.3e-30 137.1 80 85.0
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 2.8e-29 134.0 84 77.4
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 4.8e-29 133.3 101 63.4
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 2.0e-27 127.9 79 83.5
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.0e-26 125.6 78 75.6
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 2.5e-25 120.9 107 62.6
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.1e-24 117.9 64 87.5
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 6.2e-21 106.3 88 65.9
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 6.2e-21 106.3 125 44.0
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 1.2e-19 102.1 64 81.2
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 1.5e-14 85.1 54 83.3
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 1.3e-13 82.0 74 59.5
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 1.1e-12 79.0 43 90.7
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 7.2e-09 66.2 36 86.1
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 9.4e-09 65.9 40 75.0
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 8.8e-07 59.3 63 50.8
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 8.8e-07 59.3 37 70.3
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 1.5e-06 58.5 35 77.1


User provided reference genes

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