Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 3.6e-243 844.7 506 100.0
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 4.8e-187 658.3 510 79.4
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.9e-180 636.3 514 76.3
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 2.4e-170 602.8 518 71.6
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 7.7e-169 597.8 513 77.4
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 2.9e-160 569.3 506 75.3
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 6.5e-144 515.0 503 69.0
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 1.6e-134 483.8 481 66.5
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 3.9e-128 462.6 511 65.4
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 6.6e-128 461.8 511 66.7
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 6.6e-128 461.8 509 62.5
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 6.6e-128 461.8 480 61.7
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 3.3e-127 459.5 510 62.5
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 3.3e-127 459.5 510 62.5
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 6.2e-126 455.3 506 67.4
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 5.2e-125 452.2 480 64.6
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 1.3e-123 447.6 480 64.4
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 3.5e-121 439.5 480 65.2
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 3.0e-120 436.4 480 64.8
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.4e-82 311.2 515 45.2
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.2e-81 308.1 506 46.0
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 5.8e-76 289.3 512 44.9
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.0e-75 288.5 505 43.2
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 1.2e-73 281.6 526 41.1
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 2.5e-71 273.9 532 44.2
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 1.6e-70 271.2 528 37.7
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 1.4e-69 268.1 523 38.0
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 1.8e-69 267.7 523 38.0
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 5.0e-67 259.6 516 39.1
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.7e-65 253.8 521 38.0
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 7.9e-65 252.3 520 38.1
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 1.8e-64 251.1 480 40.4
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 3.0e-64 250.4 534 40.8
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.9e-63 247.7 509 36.3
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 1.9e-63 247.7 519 41.8
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 5.7e-63 246.1 526 35.7
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 9.7e-63 245.4 521 37.0
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 1.3e-62 245.0 518 41.5
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.2e-62 244.2 499 36.7
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.3e-62 242.7 522 39.8
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.4e-61 241.5 522 37.0
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.8e-61 241.1 521 40.9
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 4.1e-61 240.0 527 39.5
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 5.3e-61 239.6 511 36.0
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.2e-60 238.4 507 37.3
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.2e-60 238.4 513 38.6
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 3.4e-60 236.9 465 43.0
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 4.5e-60 236.5 513 39.8
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.0e-59 235.3 507 38.3
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.3e-59 235.0 514 36.0
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.3e-59 235.0 516 39.5
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.3e-59 235.0 555 37.5
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 8.5e-59 232.3 460 37.4
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 4.2e-58 229.9 462 39.0
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 7.2e-58 229.2 529 35.2
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 9.4e-58 228.8 530 35.3
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 2.7e-57 227.3 511 36.6
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.6e-57 226.9 523 34.6
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.1e-57 226.1 548 39.2
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 7.9e-57 225.7 518 40.5
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 1.0e-56 225.3 459 41.0
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.0e-56 223.8 478 43.1
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 6.7e-56 222.6 565 33.8
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.8e-54 217.2 523 35.9
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 3.7e-54 216.9 511 33.5
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.4e-53 214.9 522 34.1
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.8e-53 214.5 395 37.5
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 2.4e-53 214.2 492 34.1
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 6.9e-53 212.6 504 32.7
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 1.5e-52 211.5 504 33.7
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 2.0e-52 211.1 346 47.7
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 2.0e-52 211.1 508 33.7
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 3.4e-52 210.3 531 33.7
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 7.7e-52 209.1 498 32.9
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 2.2e-51 207.6 466 39.1
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.9e-51 207.2 496 33.7
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 8.5e-51 205.7 531 33.3
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.4e-50 204.9 393 38.2
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.4e-50 204.9 454 34.4
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 7.2e-50 202.6 504 33.9
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 7.2e-50 202.6 471 41.0
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 7.2e-50 202.6 456 38.4
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 1.6e-49 201.4 514 34.6
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 1.6e-49 201.4 416 42.3
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 6.1e-49 199.5 454 35.7
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 2.0e-47 194.5 497 35.8
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.0e-47 194.5 502 37.6
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 1.7e-46 191.4 454 35.7
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 1.7e-46 191.4 454 35.7
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 4.8e-46 189.9 513 31.0
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 7.0e-45 186.0 552 31.2
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.6e-44 184.9 503 31.6
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 1.7e-43 181.4 475 36.4
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 2.9e-43 180.6 495 36.0
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 2.5e-42 177.6 471 41.8
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.2e-41 175.3 512 35.5
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.4e-40 171.8 485 36.1
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 2.3e-40 171.0 398 33.2
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 8.8e-40 169.1 425 35.8
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 3.3e-39 167.2 426 37.3
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 5.7e-39 166.4 372 39.5
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 5.7e-39 166.4 502 29.1
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.4e-37 161.8 514 31.1
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 2.4e-37 161.0 525 35.6
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 9.1e-37 159.1 421 33.0
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 1.6e-36 158.3 474 34.6
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 7.7e-36 156.0 360 33.6
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 7.7e-36 156.0 379 33.8
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.2e-35 154.5 484 34.5
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 3.2e-34 150.6 407 32.2
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.6e-33 148.3 318 42.8
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.2e-32 143.3 314 36.6
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.8e-32 142.9 492 31.1
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 3.7e-30 137.1 504 35.5
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 6.3e-30 136.3 391 30.9
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 8.3e-30 136.0 300 42.0
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.0e-28 131.3 293 33.8
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 5.9e-28 129.8 507 28.0
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.7e-27 128.3 294 32.0
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.2e-27 127.9 266 38.7
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.8e-25 120.9 222 39.2
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 2.0e-23 114.8 510 26.1
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 4.4e-23 113.6 473 28.1
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 2.7e-20 104.4 397 27.5
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 5.0e-19 100.1 308 29.5
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.5e-18 98.6 207 46.9
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 2.1e-17 94.7 339 29.2
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 4.0e-16 90.5 333 29.1
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.8e-16 89.7 190 36.8
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 5.7e-15 86.7 143 39.2
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.7e-14 85.1 197 32.5
AL7G40510 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 2.2e-14 84.7 50 84.0
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 3.2e-13 80.9 241 31.5
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 7.8e-12 76.3 62 58.1
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 1.0e-11 75.9 107 41.1
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 1.0e-11 75.9 57 59.6
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 1.9e-10 71.6 115 41.7
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 3.1e-08 64.3 149 30.9
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 6.8e-08 63.2 128 33.6
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 2.9e-06 57.8 50 52.0


User provided reference genes

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