Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 4.5e-50 201.1 108 100.0
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 6.5e-41 170.6 108 87.0
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 8.4e-41 170.2 108 87.0
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.4e-40 169.5 108 87.0
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.2e-39 166.4 108 84.3
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 4.3e-37 157.9 109 82.6
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.2e-36 155.6 109 80.7
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.2e-36 155.6 109 80.7
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.2e-36 155.6 109 80.7
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.2e-31 139.8 113 71.7
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 8.2e-28 127.1 107 71.0
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-27 126.3 107 70.1
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 4.1e-27 124.8 107 69.2
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 9.1e-27 123.6 106 67.9
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 9.1e-27 123.6 106 67.9
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 9.1e-27 123.6 106 67.9
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 9.1e-27 123.6 107 68.2
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.2e-26 123.2 107 65.4
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 1.2e-26 123.2 106 67.9
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.5e-26 122.9 106 68.9
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 2.0e-26 122.5 106 67.9
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 5.9e-26 120.9 106 68.9
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 3.8e-25 118.2 106 66.0
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-24 116.7 107 65.4
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 1.1e-24 116.7 107 65.4
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 2.5e-24 115.5 106 65.1
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 8.8e-22 107.1 110 58.2
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.6e-21 105.5 115 55.7
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.8e-19 99.4 110 56.4
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.8e-19 99.4 108 53.7
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.4e-19 99.0 112 55.4
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 2.4e-19 99.0 110 56.4
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 4.1e-19 98.2 111 55.9
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 5.3e-19 97.8 110 55.5
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 6.9e-19 97.4 111 55.9
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 6.9e-19 97.4 112 58.0
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.0e-18 95.9 110 55.5
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 3.4e-18 95.1 107 56.1
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.4e-18 95.1 114 57.9
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 4.5e-18 94.7 110 55.5
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 7.7e-18 94.0 109 49.5
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 7.7e-18 94.0 109 49.5
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 7.7e-18 94.0 109 55.0
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 1.3e-17 93.2 105 54.3
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.7e-17 92.8 111 55.9
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 3.8e-17 91.7 107 55.1
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 3.8e-17 91.7 108 52.8
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 6.5e-17 90.9 111 55.0
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 8.5e-17 90.5 107 55.1
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 8.5e-17 90.5 107 55.1
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.1e-16 90.1 111 53.2
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 1.1e-16 90.1 107 52.3
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.2e-16 88.6 111 55.9
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 5.5e-16 87.8 112 52.7
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 7.2e-16 87.4 108 55.6
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 7.2e-16 87.4 112 50.0
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 7.2e-16 87.4 111 48.6
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 9.4e-16 87.0 107 54.2
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 9.4e-16 87.0 113 53.1
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 9.4e-16 87.0 110 50.9
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 1.2e-15 86.7 109 55.0
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 1.6e-15 86.3 107 54.2
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 2.7e-15 85.5 107 52.3
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 2.7e-15 85.5 112 52.7
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 4.7e-15 84.7 108 51.9
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 4.7e-15 84.7 111 46.8
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 8.0e-15 84.0 114 47.4
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 1.4e-14 83.2 110 50.0
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 1.4e-14 83.2 110 47.3
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 1.8e-14 82.8 111 49.5
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 1.8e-14 82.8 109 47.7
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.8e-14 82.8 107 50.5
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 3.0e-14 82.0 112 50.9
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 3.0e-14 82.0 115 51.3
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 3.9e-14 81.6 111 51.4
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 5.2e-14 81.3 114 50.9
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 6.7e-14 80.9 109 45.9
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 8.8e-14 80.5 119 47.1
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.8e-14 80.5 97 54.6
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 8.8e-14 80.5 111 50.5
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 8.8e-14 80.5 111 46.8
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.1e-13 80.1 109 48.6
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.5e-13 79.7 105 50.5
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.5e-13 79.7 112 48.2
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.5e-13 79.7 109 49.5
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.5e-13 79.7 106 45.3
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 2.6e-13 79.0 107 48.6
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.6e-13 79.0 105 49.5
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 3.3e-13 78.6 106 51.9
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 4.4e-13 78.2 108 49.1
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 4.4e-13 78.2 110 50.9
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 5.7e-13 77.8 110 48.2
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 5.7e-13 77.8 110 48.2
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 5.7e-13 77.8 110 48.2
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.3e-12 76.6 109 45.9
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.3e-12 76.6 107 48.6
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.3e-12 76.6 119 47.9
BcaB07g33586 Brassica carinata HOM05D004268 ORTHO05D004958 1.7e-12 76.3 108 49.1
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.7e-12 76.3 107 49.5
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 2.2e-12 75.9 90 52.2
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.8e-12 75.5 108 47.2
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 3.7e-12 75.1 114 48.2
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 3.7e-12 75.1 110 46.4
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 4.8e-12 74.7 110 50.0
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.8e-12 74.7 108 44.4
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 6.3e-12 74.3 110 46.4
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 6.3e-12 74.3 110 48.2
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 6.3e-12 74.3 108 44.4
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 8.2e-12 73.9 108 44.4
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 8.2e-12 73.9 109 46.8
A03p43270 Brassica napus HOM05D046874 ORTHO05D042050 1.1e-11 73.6 59 67.8
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.1e-11 73.6 109 45.9
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.1e-11 73.6 108 44.4
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 2.4e-11 72.4 110 49.1
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 3.1e-11 72.0 108 43.5
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 3.1e-11 72.0 107 44.9
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 4.1e-11 71.6 108 46.3
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 4.1e-11 71.6 109 46.8
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 1.2e-10 70.1 107 44.9
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.2e-10 70.1 112 45.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.6e-10 69.7 108 42.6
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 2.0e-10 69.3 108 44.4
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 2.6e-10 68.9 114 42.1
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 3.5e-10 68.6 110 46.4
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 3.5e-10 68.6 109 42.2
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 4.5e-10 68.2 110 47.3
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 7.7e-10 67.4 110 45.5
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 7.7e-10 67.4 119 42.0
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.0e-09 67.0 113 46.0
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.0e-09 67.0 106 44.3
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 1.3e-09 66.6 119 42.9
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.7e-09 66.2 97 51.5
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 1.7e-09 66.2 110 45.5
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 2.2e-09 65.9 114 45.6
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 2.2e-09 65.9 93 44.1
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 2.2e-09 65.9 107 42.1
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 3.8e-09 65.1 104 42.3
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 5.0e-09 64.7 89 51.7
BcaB04g19135 Brassica carinata HOM05D004268 ORTHO05D004958 6.5e-09 64.3 107 43.0
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.5e-08 63.2 113 43.4
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.5e-08 63.2 119 41.2
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.5e-08 62.4 110 43.6
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 3.2e-08 62.0 120 37.5
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 7.2e-08 60.8 37 75.7
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 7.2e-08 60.8 105 41.9
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 9.4e-08 60.5 109 41.3
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 9.4e-08 60.5 39 74.4
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 3.6e-07 58.5 114 40.4
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.7e-07 58.2 38 76.3
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 6.1e-07 57.8 111 41.4
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 1.0e-06 57.0 86 44.2
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 1.0e-06 57.0 39 74.4
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 4.0e-06 55.1 40 65.0
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 4.0e-06 55.1 95 44.2
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 5.2e-06 54.7 121 36.4
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 5.2e-06 54.7 113 38.1


User provided reference genes

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