Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 9.5e-240 833.2 442 100.0
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 3.5e-186 655.2 496 75.0
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.8e-185 652.9 442 82.8
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.7e-178 629.0 518 70.8
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 6.3e-175 617.8 502 71.1
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.8e-174 616.3 495 71.7
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.8e-174 616.3 495 71.7
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.8e-174 616.3 495 71.7
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 4.1e-174 615.1 442 75.8
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 1.4e-171 606.7 485 72.8
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 1.9e-163 579.7 505 69.1
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 7.4e-160 567.8 529 64.7
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 1.7e-159 566.6 439 73.3
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 2.2e-127 459.9 441 64.2
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 8.6e-124 448.0 367 72.5
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.3e-119 434.1 444 60.8
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 1.5e-99 367.5 436 55.5
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 1.9e-91 340.5 296 68.9
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 2.5e-83 313.5 275 68.4
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 8.4e-79 298.5 185 89.7
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 1.5e-75 287.7 435 46.9
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 2.0e-72 277.3 446 43.3
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 7.6e-72 275.4 434 45.2
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.2e-71 273.9 436 44.3
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 2.2e-71 273.9 252 59.9
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 4.9e-71 272.7 372 46.0
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 8.4e-71 271.9 445 42.7
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.4e-70 271.2 442 42.1
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 7.1e-70 268.9 440 42.5
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 9.3e-70 268.5 433 43.9
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.2e-69 268.1 435 44.6
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 3.0e-68 263.5 436 42.0
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.5e-67 261.2 432 42.8
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.5e-67 260.4 450 42.9
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 4.3e-67 259.6 438 42.5
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 4.3e-67 259.6 250 58.0
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 4.3e-67 259.6 250 58.0
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 7.4e-67 258.8 331 48.0
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 7.4e-67 258.8 389 42.2
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 7.4e-67 258.8 441 40.1
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 3.7e-66 256.5 215 65.6
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 8.2e-66 255.4 247 54.3
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.4e-65 254.6 377 45.6
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 2.4e-65 253.8 259 56.8
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 2.4e-65 253.8 439 42.6
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 3.1e-65 253.4 437 41.0
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 4.1e-65 253.1 462 41.6
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.3e-65 252.7 250 58.8
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 5.3e-65 252.7 383 45.4
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 1.2e-64 251.5 299 52.2
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 2.6e-64 250.4 346 46.2
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 3.4e-64 250.0 395 43.3
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 4.5e-64 249.6 243 54.3
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 5.8e-64 249.2 436 40.8
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 5.8e-64 249.2 438 38.6
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 5.8e-64 249.2 275 52.4
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 1.0e-63 248.4 245 56.7
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 2.2e-63 247.3 370 44.3
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 3.8e-63 246.5 437 38.7
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 5.0e-63 246.1 254 57.5
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 6.5e-63 245.7 435 38.6
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 6.5e-63 245.7 435 38.9
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 6.5e-63 245.7 261 52.5
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.1e-62 245.0 247 53.4
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.4e-62 244.6 442 40.5
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 2.5e-62 243.8 372 43.0
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 2.5e-62 243.8 255 53.7
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 5.5e-62 242.7 367 43.6
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 7.1e-62 242.3 248 52.0
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.2e-61 241.5 219 59.8
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 2.1e-61 240.7 437 38.7
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 7.9e-61 238.8 249 53.4
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.0e-60 238.4 313 47.6
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 2.3e-60 237.3 305 48.9
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 2.3e-60 237.3 446 38.1
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 3.0e-60 236.9 364 43.1
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.5e-59 234.6 248 51.6
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.9e-59 234.2 262 51.9
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 2.5e-59 233.8 445 38.9
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.5e-59 233.8 435 40.0
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 7.4e-59 232.3 281 46.6
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 1.6e-58 231.1 260 51.9
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 3.7e-58 229.9 247 50.2
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 8.2e-58 228.8 252 52.4
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 2.4e-57 227.3 206 57.8
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 4.1e-57 226.5 281 48.8
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.0e-56 224.2 244 53.3
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 4.5e-56 223.0 280 49.6
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 5.9e-56 222.6 436 37.6
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 2.9e-55 220.3 458 36.5
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 1.4e-54 218.0 436 38.5
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 1.4e-54 218.0 372 39.8
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 3.2e-54 216.9 298 42.6
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 2.3e-52 210.7 364 39.3
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 3.9e-52 209.9 253 44.7
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 3.9e-52 209.9 370 40.8
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 8.8e-52 208.8 246 51.6
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.7e-50 204.5 442 37.3
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 1.1e-49 201.8 239 46.0
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 5.3e-49 199.5 314 42.0
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.2e-48 198.4 182 58.8
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 2.0e-48 197.6 271 45.8
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.9e-46 191.0 270 47.8
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 7.2e-46 189.1 435 34.0
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 2.1e-45 187.6 288 42.7
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 6.1e-45 186.0 220 47.3
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 8.8e-44 182.2 265 41.5
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.5e-43 181.4 179 56.4
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 1.5e-40 171.4 125 78.4
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 1.5e-40 171.4 125 78.4
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 4.5e-40 169.9 246 45.9
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 7.7e-40 169.1 434 33.2
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 7.7e-40 169.1 294 37.8
BcaC08g42924 Brassica carinata HOM05D004411 ORTHO05D032367 8.5e-39 165.6 138 73.2
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.5e-38 164.9 448 32.4
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 3.2e-38 163.7 244 41.8
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 3.2e-38 163.7 278 39.9
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.2e-38 163.7 377 35.5
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 4.7e-37 159.8 241 39.8
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 3.7e-34 150.2 453 32.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 4.8e-34 149.8 86 88.4
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.1e-33 146.7 180 46.1
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 4.1e-33 146.7 268 37.3
A09p64030 Brassica napus HOM05D004411 ORTHO05D032662 5.3e-33 146.4 127 69.3
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 7.7e-32 142.5 120 71.7
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 1.0e-31 142.1 120 71.7
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 1.1e-30 138.7 138 55.1
BolC6t35294H Brassica oleracea HOM05D004411 ORTHO05D032367 1.9e-30 137.9 171 56.7
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 2.5e-30 137.5 323 36.2
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 6.1e-29 132.9 341 36.4
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 6.1e-29 132.9 205 39.0
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 2.0e-27 127.9 239 36.8
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.4e-25 121.7 165 51.5
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 9.1e-25 119.0 193 38.9
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 2.7e-24 117.5 208 41.8
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 4.2e-22 110.2 172 40.7
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 1.2e-21 108.6 117 50.4
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 1.2e-21 108.6 117 53.8
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 2.1e-21 107.8 138 44.2
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 1.4e-20 105.1 98 60.2
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 1.4e-20 105.1 217 35.0
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 2.3e-20 104.4 117 48.7
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 1.5e-19 101.7 119 50.4
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 5.7e-19 99.8 82 58.5
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 3.1e-17 94.0 81 58.0
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 3.1e-17 94.0 78 56.4
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 1.8e-12 78.2 289 28.4
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.5e-11 75.1 210 27.6
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 2.0e-11 74.7 110 41.8
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 5.7e-11 73.2 82 50.0
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 1.7e-10 71.6 274 25.2
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.2e-08 65.5 55 56.4
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 1.7e-07 61.6 177 29.9
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 3.0e-07 60.8 46 58.7
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 3.9e-07 60.5 99 35.4
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 6.6e-07 59.7 116 31.0
C06p01630 Brassica napus HOM05D004411 ORTHO05D032367 1.9e-06 58.2 49 67.3
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 4.3e-06 57.0 115 33.0


User provided reference genes

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