Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 2.7e-40 169.1 113 100.0
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 1.6e-29 133.3 115 73.9
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.6e-29 133.3 115 59.1
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 2.1e-29 132.9 116 61.2
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 2.3e-28 129.4 114 58.8
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 7.5e-27 124.4 66 84.8
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 1.7e-26 123.2 75 77.3
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 2.9e-26 122.5 114 72.8
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 6.4e-26 121.3 114 77.2
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 6.4e-26 121.3 114 77.2
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 6.4e-26 121.3 114 77.2
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 3.1e-20 102.4 75 65.3
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 4.6e-16 88.6 63 65.1
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.1e-14 84.0 68 60.3
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 2.5e-14 82.8 73 58.9
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 3.3e-14 82.4 68 58.8
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 3.3e-14 82.4 68 58.8
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 3.3e-14 82.4 68 58.8
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 4.3e-14 82.0 68 57.4
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 9.5e-14 80.9 68 57.4
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 9.5e-14 80.9 73 57.5
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 1.6e-13 80.1 73 57.5
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 1.6e-13 80.1 73 56.2
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 1.6e-13 80.1 73 57.5
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 1.6e-13 80.1 73 57.5
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 1.6e-13 80.1 68 55.9
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 1.6e-13 80.1 73 57.5
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 2.8e-13 79.3 77 51.9
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 2.8e-13 79.3 74 56.8
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 2.8e-13 79.3 73 54.8
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 2.8e-13 79.3 74 52.7
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 3.6e-13 79.0 73 56.2
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 3.6e-13 79.0 73 56.2
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 3.6e-13 79.0 68 55.9
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 3.6e-13 79.0 68 55.9
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 3.6e-13 79.0 66 59.1
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 4.7e-13 78.6 73 54.8
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 6.2e-13 78.2 73 56.2
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 8.1e-13 77.8 74 56.8
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 1.1e-12 77.4 68 57.4
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 1.1e-12 77.4 70 54.3
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 1.1e-12 77.4 66 56.1
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 1.4e-12 77.0 73 54.8
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 1.8e-12 76.6 73 53.4
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 2.3e-12 76.3 73 53.4
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 2.3e-12 76.3 73 54.8
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 2.3e-12 76.3 73 47.9
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 3.1e-12 75.9 73 53.4
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 3.1e-12 75.9 66 54.5
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 4.0e-12 75.5 69 55.1
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 4.0e-12 75.5 66 56.1
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 5.2e-12 75.1 66 51.5
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 5.2e-12 75.1 66 51.5
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 5.2e-12 75.1 66 51.5
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 5.2e-12 75.1 66 51.5
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 5.2e-12 75.1 66 51.5
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 5.2e-12 75.1 66 56.1
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 5.2e-12 75.1 63 58.7
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 5.2e-12 75.1 73 49.3
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 6.8e-12 74.7 66 56.1
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 6.8e-12 74.7 69 55.1
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 8.9e-12 74.3 73 52.1
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 8.9e-12 74.3 68 54.4
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 1.2e-11 73.9 65 56.9
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.2e-11 73.9 66 51.5
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 1.2e-11 73.9 66 56.1
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 1.5e-11 73.6 73 54.8
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 1.5e-11 73.6 69 55.1
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.5e-11 73.6 67 56.7
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 1.5e-11 73.6 70 48.6
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 2.0e-11 73.2 66 57.6
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 2.0e-11 73.2 66 50.0
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 2.6e-11 72.8 71 54.9
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 2.6e-11 72.8 64 51.6
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 2.6e-11 72.8 67 56.7
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 2.6e-11 72.8 64 51.6
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 3.4e-11 72.4 66 54.5
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 3.4e-11 72.4 68 54.4
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 3.4e-11 72.4 68 57.4
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 3.4e-11 72.4 66 53.0
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.4e-11 72.4 66 50.0
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 3.4e-11 72.4 73 52.1
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 4.4e-11 72.0 64 56.2
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 4.4e-11 72.0 66 56.1
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 4.4e-11 72.0 68 52.9
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 4.4e-11 72.0 66 54.5
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 4.4e-11 72.0 66 54.5
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 4.4e-11 72.0 66 54.5
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 4.4e-11 72.0 66 48.5
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 4.4e-11 72.0 70 48.6
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 4.4e-11 72.0 70 48.6
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 5.8e-11 71.6 70 54.3
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 5.8e-11 71.6 68 50.0
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 5.8e-11 71.6 65 50.8
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 7.6e-11 71.2 69 53.6
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 7.6e-11 71.2 66 51.5
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 9.9e-11 70.9 66 53.0
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 9.9e-11 70.9 66 54.5
TAR629G2714 Trochodendron aralioides HOM05D004357 ORTHO05D005064 9.9e-11 70.9 68 50.0
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 1.3e-10 70.5 55 56.4
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 1.3e-10 70.5 66 47.0
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 1.7e-10 70.1 66 51.5
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.7e-10 70.1 68 52.9
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 1.7e-10 70.1 68 52.9
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.7e-10 70.1 66 53.0
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 2.2e-10 69.7 68 52.9
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 2.2e-10 69.7 66 45.5
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 2.9e-10 69.3 68 48.5
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 2.9e-10 69.3 65 55.4
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 3.8e-10 68.9 66 50.0
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 3.8e-10 68.9 70 51.4
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 3.8e-10 68.9 70 51.4
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 3.8e-10 68.9 66 56.1
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 3.8e-10 68.9 64 56.2
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 3.8e-10 68.9 68 55.9
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 4.9e-10 68.6 66 53.0
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 4.9e-10 68.6 66 51.5
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 1.1e-09 67.4 66 50.0
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 1.4e-09 67.0 66 51.5
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 1.9e-09 66.6 66 48.5
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.4e-09 66.2 64 53.1
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 3.2e-09 65.9 68 48.5
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 3.2e-09 65.9 68 48.5
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 4.1e-09 65.5 68 45.6
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 4.1e-09 65.5 66 48.5
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 5.4e-09 65.1 64 53.1
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 7.1e-09 64.7 75 44.0
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 7.1e-09 64.7 66 50.0
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.2e-08 63.9 66 47.0
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 1.2e-08 63.9 66 50.0
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 2.1e-08 63.2 75 42.7
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 2.1e-08 63.2 65 47.7
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 2.1e-08 63.2 66 50.0
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 2.1e-08 63.2 66 50.0
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 2.7e-08 62.8 69 49.3
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 3.5e-08 62.4 65 46.2
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 4.6e-08 62.0 71 43.7
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 7.8e-08 61.2 65 49.2
Nn1g03453 Nelumbo nucifera HOM05D004357 ORTHO05D005064 1.0e-07 60.8 67 46.3
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 1.3e-07 60.5 71 42.3
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 1.7e-07 60.1 75 42.7
BolC3t14084H Brassica oleracea HOM05D004357 ORTHO05D005064 2.3e-07 59.7 66 51.5
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 8.6e-07 57.8 70 44.3
Prupe.4G218300 Prunus persica HOM05D004357 ORTHO05D005064 1.9e-06 56.6 66 37.9
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 3.3e-06 55.8 54 55.6
Gohir.D05G372800 Gossypium hirsutum HOM05D004357 ORTHO05D005064 5.6e-06 55.1 59 49.2
Gorai.009G441300 Gossypium raimondii HOM05D004357 ORTHO05D005064 9.6e-06 54.3 59 49.2
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 9.6e-06 54.3 65 40.0


User provided reference genes

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