Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 7.5e-109 397.1 191 100.0
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 8.3e-100 367.1 191 93.7
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 2.7e-98 362.1 193 91.2
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 7.8e-98 360.5 192 91.7
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 1.3e-97 359.8 192 91.1
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 2.3e-97 359.0 191 90.6
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 3.0e-97 358.6 191 90.6
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.9e-97 358.2 191 90.1
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 8.9e-94 347.1 192 88.0
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 3.1e-86 322.0 201 82.1
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 4.4e-85 318.2 187 79.7
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 1.3e-76 290.0 156 92.3
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 1.1e-72 276.9 223 65.9
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 1.1e-70 270.4 191 69.6
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 6.9e-70 267.7 198 67.7
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 9.0e-70 267.3 193 66.3
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.6e-69 265.8 193 66.3
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 3.4e-69 265.4 184 70.1
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 3.4e-69 265.4 197 67.0
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 4.5e-69 265.0 193 69.4
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 9.9e-69 263.8 198 67.2
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.3e-68 263.5 193 69.9
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 1.7e-68 263.1 199 65.3
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 2.9e-68 262.3 192 67.2
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 3.8e-68 261.9 194 67.5
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 8.4e-68 260.8 204 63.2
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.4e-68 260.8 184 69.0
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.4e-68 260.8 187 69.0
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 8.4e-68 260.8 187 69.0
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 1.9e-67 259.6 194 64.9
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 3.2e-67 258.8 192 68.8
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 3.2e-67 258.8 197 66.0
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 5.4e-67 258.1 196 65.8
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.6e-66 256.5 191 66.0
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 3.5e-66 255.4 187 64.7
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 4.6e-66 255.0 192 64.6
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 4.6e-66 255.0 199 63.3
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 6.0e-66 254.6 193 63.7
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 6.0e-66 254.6 192 64.6
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 1.3e-65 253.4 197 65.0
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 1.3e-65 253.4 195 63.6
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 1.3e-65 253.4 194 67.0
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 2.3e-65 252.7 195 63.1
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 5.1e-65 251.5 195 62.6
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 6.7e-65 251.1 210 61.9
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 6.7e-65 251.1 198 63.6
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 8.7e-65 250.8 197 65.0
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 1.5e-64 250.0 197 62.4
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.3e-64 248.4 212 60.8
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 5.6e-64 248.1 195 63.6
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 5.6e-64 248.1 195 60.5
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 7.4e-64 247.7 184 64.7
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 1.6e-63 246.5 187 63.1
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 2.1e-63 246.1 194 60.8
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 2.1e-63 246.1 199 60.8
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 3.6e-63 245.4 196 63.8
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 4.8e-63 245.0 187 62.0
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 6.2e-63 244.6 185 61.6
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 8.1e-63 244.2 227 56.8
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.1e-62 243.8 186 62.9
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 1.1e-62 243.8 191 60.7
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 3.1e-62 242.3 227 56.4
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 4.0e-62 241.9 195 62.1
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 4.0e-62 241.9 192 62.0
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 6.9e-62 241.1 195 62.6
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 2.0e-61 239.6 212 58.0
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 2.0e-61 239.6 126 84.9
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 2.6e-61 239.2 267 51.7
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 3.4e-61 238.8 192 61.5
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 9.9e-61 237.3 188 61.7
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 1.3e-60 236.9 188 60.1
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 2.2e-60 236.1 195 61.0
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 3.8e-60 235.3 185 60.5
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 3.8e-60 235.3 190 60.0
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 4.9e-60 235.0 141 75.2
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 1.4e-59 233.4 185 60.5
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 3.2e-59 232.3 254 51.2
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 7.1e-59 231.1 187 56.7
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 3.5e-58 228.8 123 82.1
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 6.0e-58 228.0 191 58.1
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 7.9e-58 227.6 193 59.6
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.3e-57 226.9 119 82.4
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 2.3e-57 226.1 122 82.0
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 6.7e-57 224.6 173 65.3
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 6.7e-57 224.6 192 62.0
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 2.5e-56 222.6 118 83.1
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 9.6e-56 220.7 191 57.1
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.3e-55 220.3 121 79.3
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.8e-54 216.5 192 57.3
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.1e-54 215.7 201 58.7
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 3.8e-52 208.8 116 74.1
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 8.4e-52 207.6 196 51.5
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.4e-51 206.8 196 51.5
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 1.6e-50 203.4 254 48.8
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 4.6e-50 201.8 192 52.6
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 4.6e-50 201.8 121 68.6
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 8.2e-47 191.0 114 72.8
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 1.8e-46 189.9 123 72.4
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 3.1e-46 189.1 224 44.6
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 6.9e-46 188.0 161 52.8
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.6e-45 186.0 116 69.8
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 3.8e-44 182.2 161 59.0
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 8.5e-44 181.0 93 82.8
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 7.9e-42 174.5 115 59.1
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 7.9e-42 174.5 159 56.6
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 6.7e-41 171.4 121 62.0
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 3.3e-40 169.1 194 48.5
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 1.4e-38 163.7 115 57.4
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 1.5e-37 160.2 156 53.8
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 4.5e-37 158.7 202 47.0
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 7.7e-37 157.9 128 59.4
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 2.2e-36 156.4 157 54.8
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 2.2e-36 156.4 132 64.4
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 2.5e-35 152.9 134 61.2
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 5.7e-32 141.7 258 36.8
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 2.2e-31 139.8 140 52.9
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 5.3e-30 135.2 102 55.9
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 7.2e-27 124.8 106 47.2
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 9.4e-27 124.4 133 49.6
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 2.7e-26 122.9 96 58.3
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 6.1e-26 121.7 63 84.1
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 6.7e-25 118.2 111 42.3
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 8.8e-25 117.9 108 47.2
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 3.3e-24 115.9 58 82.8
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 4.4e-24 115.5 60 76.7
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 1.7e-23 113.6 96 51.0
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 1.4e-22 110.5 110 56.4
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.1e-22 109.4 106 45.3
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 1.9e-19 100.1 113 49.6
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 2.1e-18 96.7 93 39.8
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 2.1e-18 96.7 104 44.2
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 4.0e-17 92.4 112 46.4
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.1e-14 82.8 36 97.2
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 3.1e-14 82.8 36 97.2
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 7.0e-14 81.6 111 43.2
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 5.9e-13 78.6 94 48.9
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 1.3e-12 77.4 40 82.5
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 2.5e-11 73.2 110 40.9
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 5.2e-09 65.5 110 33.6
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 5.7e-08 62.0 105 40.0
BolC6t35595H Brassica oleracea HOM05D040450 ORTHO05D033487 8.3e-07 58.2 45 62.2
SHI05088 Sapria himalayana HOM05D005520 ORTHO05D006633 1.8e-06 57.0 120 35.8
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 7.0e-06 55.1 29 79.3


User provided reference genes

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