Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.4e-245 852.4 419 100.0
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 3.8e-238 827.8 419 95.2
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 8.4e-238 826.6 419 95.0
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.4e-237 825.9 419 94.7
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 4.2e-237 824.3 419 95.0
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 2.7e-236 821.6 419 94.5
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 8.7e-235 816.6 419 95.0
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 3.1e-232 808.1 420 93.6
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.7e-230 802.4 420 92.6
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 8.4e-230 800.0 417 92.8
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.9e-229 798.9 421 92.9
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.3e-227 792.7 420 92.1
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 2.2e-222 775.4 416 88.5
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 3.1e-216 755.0 416 86.1
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 3.1e-200 701.8 419 83.8
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.6e-199 699.5 416 79.8
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.2e-198 695.7 416 78.1
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 5.5e-197 691.0 416 78.6
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.2e-196 689.9 414 78.5
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 1.6e-196 689.5 416 77.9
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 2.1e-196 689.1 416 78.4
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 1.0e-195 686.8 416 78.1
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 4.0e-195 684.9 415 77.8
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 1.2e-194 683.3 411 78.8
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.5e-194 682.9 416 77.6
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 2.0e-194 682.6 415 78.8
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.6e-194 682.2 414 77.1
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 3.3e-194 681.8 416 76.9
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 3.3e-194 681.8 419 76.1
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.5e-194 680.6 415 77.1
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 9.7e-194 680.2 416 77.2
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.7e-193 679.5 419 76.1
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.8e-193 678.7 416 76.9
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.8e-192 676.0 415 76.1
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.8e-192 676.0 416 77.2
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 5.3e-192 674.5 416 76.0
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.3e-192 674.5 432 75.0
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.3e-192 674.5 415 76.4
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 7.0e-192 674.1 437 73.7
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 7.0e-192 674.1 432 75.0
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 7.0e-192 674.1 416 76.2
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.2e-191 673.3 416 76.7
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.2e-191 673.3 419 74.9
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.6e-191 672.9 416 76.9
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.6e-191 672.9 417 76.3
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.0e-191 672.5 413 76.3
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 7.7e-191 670.6 416 74.5
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 7.7e-191 670.6 416 76.2
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.0e-190 670.2 432 74.5
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.3e-190 669.8 416 75.0
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.3e-190 669.8 415 75.7
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.3e-190 669.8 415 75.4
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.7e-190 669.5 416 75.5
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.9e-190 668.7 416 75.7
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 2.9e-190 668.7 416 75.7
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 2.9e-190 668.7 414 75.6
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.5e-190 667.5 415 75.9
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.1e-189 666.8 416 75.5
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.5e-189 666.4 416 75.0
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.9e-189 666.0 416 75.5
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.5e-189 665.6 416 75.0
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.5e-189 665.6 432 74.3
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 2.5e-189 665.6 415 75.2
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 2.5e-189 665.6 416 75.0
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.2e-189 665.2 416 76.0
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 3.2e-189 665.2 416 75.5
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 7.2e-189 664.1 416 74.5
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 9.4e-189 663.7 416 75.0
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 9.4e-189 663.7 416 75.2
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.6e-188 662.9 415 74.2
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 2.7e-188 662.1 415 74.2
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 4.7e-188 661.4 416 75.0
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 6.1e-188 661.0 415 75.2
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 8.0e-188 660.6 411 75.7
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.4e-187 659.8 416 73.6
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.4e-187 659.8 416 75.2
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.4e-187 659.8 416 74.8
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.4e-187 659.8 414 74.9
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 3.0e-187 658.7 416 74.8
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 5.2e-187 657.9 416 72.6
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 8.8e-187 657.1 416 75.0
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.5e-186 656.4 416 74.5
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.5e-186 656.4 416 73.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 4.4e-186 654.8 436 72.5
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 7.5e-186 654.1 416 74.0
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 7.5e-186 654.1 416 72.8
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 7.5e-186 654.1 416 71.9
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 9.8e-186 653.7 417 74.8
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.2e-185 652.5 416 74.3
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.7e-185 651.7 411 74.9
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 3.7e-185 651.7 416 71.6
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.1e-184 650.2 430 72.6
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.8e-184 649.4 415 72.5
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 4.1e-184 648.3 414 72.9
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 7.0e-184 647.5 410 73.7
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 1.6e-183 646.4 415 73.3
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.6e-183 646.4 433 71.8
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 2.0e-183 646.0 418 73.2
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.5e-183 645.2 416 72.6
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.0e-182 643.7 414 72.7
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 2.9e-182 642.1 415 72.8
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 6.5e-182 641.0 416 74.0
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 7.2e-181 637.5 416 71.6
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.1e-180 636.0 416 73.3
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.8e-180 635.6 415 72.5
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 4.7e-180 634.8 419 71.8
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.0e-179 633.6 418 70.6
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.0e-179 633.6 456 67.1
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.8e-179 632.9 410 71.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 4.0e-179 631.7 412 71.1
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 4.0e-179 631.7 403 74.7
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 4.4e-178 628.2 412 71.6
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 7.5e-178 627.5 412 70.6
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-177 625.9 449 67.5
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 1.8e-176 622.9 415 69.2
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 9.2e-176 620.5 417 69.3
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.6e-175 619.8 412 69.7
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 5.9e-175 617.8 411 70.3
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.8e-175 617.5 417 69.3
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 2.3e-174 615.9 415 71.6
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 2.3e-174 615.9 416 71.2
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.8e-171 606.3 416 70.9
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.8e-171 606.3 420 68.8
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.0e-171 605.5 415 70.6
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.2e-170 603.6 498 59.8
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.5e-170 603.2 416 70.7
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 4.4e-170 601.7 421 67.9
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 9.8e-170 600.5 363 76.9
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.4e-168 594.7 358 78.5
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 5.9e-167 591.3 421 66.5
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 2.5e-165 585.9 416 65.9
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 4.3e-165 585.1 359 75.2
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 9.2e-160 567.4 368 72.3
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.9e-157 559.7 412 62.4
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.2e-154 550.4 344 74.7
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 9.2e-152 540.8 341 73.6
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 3.5e-151 538.9 410 60.5
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 6.2e-148 528.1 413 59.3
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.7e-145 520.0 415 59.5
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 6.2e-140 501.5 433 59.4
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 6.9e-139 498.0 415 59.0
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.7e-134 483.4 431 53.6
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 6.4e-129 464.9 301 73.1
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.4e-128 463.0 340 66.5
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.6e-119 432.2 315 67.9
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 2.6e-114 416.4 302 68.9
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 8.7e-110 401.4 291 66.3
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 8.2e-108 394.8 221 81.0
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 7.6e-106 388.3 509 41.1
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.5e-101 374.0 406 46.8
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 4.3e-101 372.5 401 46.4
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.8e-100 369.8 421 45.6
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 2.7e-95 353.2 235 71.5
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.1e-91 341.3 244 66.0
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.2e-88 329.7 198 74.7
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.2e-87 327.8 198 74.2
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 6.7e-78 295.4 221 65.6
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 2.5e-72 276.9 216 66.7
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 5.4e-67 259.2 174 70.7
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.5e-64 249.2 162 75.3
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 8.0e-63 245.4 258 51.2
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 7.0e-59 232.3 179 63.1
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.9e-58 229.2 151 72.8
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 2.8e-55 220.3 229 51.5
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 3.6e-55 219.9 155 69.0
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.4e-53 213.0 185 56.8
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.4e-51 206.1 123 78.0
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.5e-50 203.4 335 38.5
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.0e-47 192.2 121 68.6
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 8.9e-46 188.7 341 37.5
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.1e-43 181.8 124 68.5
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.1e-43 181.8 124 70.2
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 7.1e-35 152.5 127 55.1
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 4.6e-34 149.8 100 68.0
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.2e-27 126.7 124 54.8
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 7.8e-26 122.5 66 80.3
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 2.3e-25 120.9 86 69.8
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 5.1e-25 119.8 71 76.1
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 4.8e-15 86.7 62 62.9
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 2.9e-12 77.4 42 83.3
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 3.8e-12 77.0 83 43.4
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 2.4e-11 74.3 94 40.4
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.2e-10 72.0 59 66.1
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.8e-06 58.2 35 68.6
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 4.0e-06 57.0 133 27.1


User provided reference genes

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